Query= MSMg01no079_h19.b1 MSMg01no079_h19.b1 CHROMAT_FILE:
MSMg01no079_h19.b1 PHD_FILE: MSMg01no079_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:08 2005
(673 letters)
>mm_chr14_95756859_95757931
Length = 1073
Score = 1079 bits (558), Expect = 0.0
Identities = 570/574 (99%), Gaps = 2/574 (0%)
Strand = Plus / Minus
Query: 5 gaattctac-accattcctatagacattaagtcttttgttcattgaaattcttgaaagaa 63
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 573 gaattctacaaccattcctatagacgttaagtcttttgttcattgaaattcttgaaagaa 514
Query: 64 tctgtgagcagcagaatgctactcaccatcagactaattttccctagagcctgtattctg 123
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 513 tctgtgagcagcagaatgctactcaccattagactaa-tttccctagagcctgtattctg 455
Query: 124 gcattatccttatcacaggaaggctttacagaaatgagtatagtgtttttgtgaatcctt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gcattatccttatcacaggaaggctttacagaaatgagtatagtgtttttgtgaatcctt 395
Query: 184 gtgtacaactttaccacaagtcatgcactgggcaacaagtaagactcaagtgaatgagaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gtgtacaactttaccacaagtcatgcactgggcaacaagtaagactcaagtgaatgagaa 335
Query: 244 aagagtcaaagagagaagaaatgcttttaaatgcaaatatcccatccagtcagtattttt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 aagagtcaaagagagaagaaatgcttttaaatgcaaatatcccatccagtcagtattttt 275
Query: 304 tacatgtacttgaagaaaatgagttgtaatttcgagatctacgcaggttgttctgtgaca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tacatgtacttgaagaaaatgagttgtaatttcgagatctacgcaggttgttctgtgaca 215
Query: 364 gttttctgtgataaattaataattttaaatatgacacccagaaacattctgtctcatttc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 gttttctgtgataaattaataattttaaatatgacacccagaaacattctgtctcatttc 155
Query: 424 ttttctaaaagagctacttaaaattttatgcaagagaatctttcagaatatagttattgt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 ttttctaaaagagctacttaaaattttatgcaagagaatctttcagaatatagttattgt 95
Query: 484 gaacaatttactacaaaataatatttggtattgtaagattagattatctattacttatcg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 gaacaatttactacaaaataatatttggtattgtaagattagattatctattacttatcg 35
Query: 544 agtattttatttacctattatatcattcgaaatc 577
||||||||||||||||||||||||||||||||||
Sbjct: 34 agtattttatttacctattatatcattcgaaatc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space: 704769
Effective search space used: 704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no079_h19.g1 MSMg01no079_h19.g1 CHROMAT_FILE:
MSMg01no079_h19.g1 PHD_FILE: MSMg01no079_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:08 2005
(557 letters)
>mm_chr14_95665288_95666245
Length = 958
Score = 1009 bits (522), Expect = 0.0
Identities = 546/558 (97%), Gaps = 9/558 (1%)
Strand = Plus / Plus
Query: 5 tctaactagg-atataattattgttaaagtttccatgggaaaaaataaaactatcggaaa 63
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tctaactaggtatataattattgttaaagtttccatgggaaaaaataaaactatcggaaa 264
Query: 64 gtaatgaatacttaattttgttatgtttagagtatgtactcatgttacaatccaaaagct 123
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtaataaataattaattttgttatgtttagagtatgtactcatgttacaatccaaaagct 324
Query: 124 aaaacataatttctcttaaatttatcccatcagacagtgattttatttgagaaagtttaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaaacataatttctcttaaatttatcccatcagacagtgattttatttgagaaagtttaa 384
Query: 184 tttgtgaactttatctgaaccatctaattttatttcagaaagttggactgtatttctagc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttgtgaactttatctgaaccatctaattttatttcagaaagttggactgtatttctagc 444
Query: 244 atcttca----tttttttcattcatcactatattcatcattttcaatgaattgttctgtg 299
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atcttcaaacattt----cattcatcactatattcatcattttcaatgaattgttctgtg 500
Query: 300 ttttcaatatgttataattttgtctattatgatatttgttattagataataatattcaga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttcaatatgttataattttgtctattatgatatttgttattagataataatattcaga 560
Query: 360 gtcttagtcagtactcaagtgctgtgaagagacagcatgaccacagcaagtcatgtaaag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtcttagtcagtactcaagtgctgtgaagagacagcatgaccacagcaagtcatgtaaag 620
Query: 420 gaaagcatttaattggggcttctttatggtttcagaattttagttcattgttggtatggt 479
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaaagtatttaattggggcttctttatggtttcagaattttagttcattgttggtatggt 680
Query: 480 aggaagcttggcagcatgcgagtagataccatattgcaggagatgttcaaagttctagtt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aggaagcttggcagcatgcgagtagataccatattgcaggagatgttcaaagttctagtt 740
Query: 540 cctgattctcaggtagta 557
||||||||||||||||||
Sbjct: 741 cctgattctcaggtagta 758
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 958
Length adjustment: 10
Effective length of query: 547
Effective length of database: 948
Effective search space: 518556
Effective search space used: 518556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
