BAC Information

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BAC

Clone NameMSMg01-079M14
Chromosome14 (Build37)
Map Location 15,966,854 - 15,967,439
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr720, LOC667125, LOC100042543, Olfr31, Il3ra, LOC627139, Olfr721-ps1, LOC667152, LOC100042147, Slc4a7, Nek10
Downstream geneLrrc3b, LOC667205, 1700062C10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079M14.T7 (MSMg01no079_m14.b1)MSMg01-079M14.TJ (MSMg01no079_m14.g1)
ACCAG300784AG300785
length695700
length of high quality
(start - end)
640 (37 - 676)586 (70 - 655)
definitionCHROMAT_FILE: MSMg01no079_m14.b1 PHD_FILE: MSMg01no079_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:30 2005CHROMAT_FILE: MSMg01no079_m14.g1 PHD_FILE: MSMg01no079_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATATTTGCGGCGCTATACGACTCCTATCGGGAGAGATCCGCGGAATTCCC
TACTCTGGGGCTTAGAGCCTTCATAGGACTAAGGGCCTCTCCTCCCATTG
ATGAACGAGTAGGTCATCCTCTGCTACATAAGCAGCTGGAGCCGTGAGTC
CCATCATATGTATTCTTTGGTTGGTGGTTTAGTCCCTGGGAGCTCTGGAG
GTACTGGTTAGTTCATATTGTTGTTCCTCCTATGTGGCTGCAAAACCCTT
CACTTCCTGGGTACTTTCTCTAGCTCCTTCATTGGGGACCCTGTGCTCAG
TCCAATAGATGTCTTTAAGCATCCTCTTCTGTATTTGTCAGGTACTAACA
GAGTCTCTCAGGAGAGATCTATTTCAGGCTCCTGTCAGCAAGCACATGTT
GGCATCCACAATAGTGTCTGGCTTTGGTGATTGTTTATGGGATAGATCCT
CAAGTGGAGTAGTCTCTGCATGGTCATTCCTTCATTCTCTGCTCTACTCT
TTGTCTCTGTAACTCCTCCAATGGGTATTTTATTCCCCCTTCTAAGAAGG
ATCAAAGTATCCACACTTTGGTCTTCATTCTTGAGTTTCATGTGGTTTGT
GAATTGTATCTTGGNTATGCTGAGCTTCTGGGCTAATATCCACTTCTCAG
TGAGTGCATATTATGTGTGTTCTTTTGTGATTGGGTTACCAAACT
TGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGTGTCCTCTTCTGATTCTACGGCACCAGAC
ATGCATGCAGAATACATACAGACAAAACAGTCAGACATATAAAATAAGTC
TAAAAAATAAAATAATTATTAGTTTGTGGTATATATCAATAGCTCATTTC
TTGAGCAAGAACTTTGTAAATGACTACACCTATCTCAATAGCTGAGAAAC
CATTCAGTCTCCATTTTGTTCCTAGGAGACATTTTTAATCTTTAATCAAG
TTAAATTTTCTGTTTATTATGAAATTTAAGTTTCTGTTTCTTGGAGCTGG
GCTTCACCCAACCCCCATATTCATAGAATGTACCAAACACCATTGCCCCC
AGATCCACTCATTCTCAAAAATGTTATATCATGTCCCACTTTCCTTAACT
GTCTGGTCTTGCTCCTATAACCATGCTTATGTGCAAATTTCCCACCCTGT
GATTTTGCCCTATAAAGGGGGCTTGAGAAATTGGCCCAGACCTGGTCCTA
CAAAGCCTCCTTATGGAGAGACAGCCATGGATTCAGCTCTGATATGTACA
CAAAATAAAGCATACATTAATTTAGCCATAATTTGGATCACTGTGATTAA
TATAGTGTCCAAATGGTGGCCATAGCTGAACCAGTCTGGTAATGAGTATA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_m14.g1 MSMg01no079_m14.g1 CHROMAT_FILE:
MSMg01no079_m14.g1 PHD_FILE: MSMg01no079_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:30 2005
         (586 letters)



>mm_chr14_15966552_15967537
          Length = 986

 Score = 1056 bits (546), Expect = 0.0
 Identities = 576/586 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgtcctcttctgattctacggcaccagacatgcatgcagaatacatacagacaaaaca 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 888 agtgtcctcttctgattctatggcaccagacatgcatgcagaatacatacagacaaaaca 829

                                                                       
Query: 61  gtcagacatataaaataagtctaaaaaataaaataattattagtttgtggtatatatcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 gtcagacatataaaataagtctaaaaaataaaataattattagtttgtggtatatatcaa 769

                                                                       
Query: 121 tagctcatttcttgagcaagaactttgtaaatgactacacctatctcaatagctgagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 tagctcatttcttgagcaagaactttgtaaatgactacacctatctcaatagctgagaaa 709

                                                                       
Query: 181 ccattcagtctccattttgttcctaggagacatttttaatctttaatcaagttaaatttt 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 708 ccattcagtctccattttgttcctaggagacattttgaatctttaatcaagttaaatttt 649

                                                                       
Query: 241 ctgtttattatgaaatttaagtttctgtttcttggagctgggcttcacccaacccccata 300
            ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ttgtttattatgaaatgtaagtttctgtttcttggagctgggcttcacccaacccccata 589

                                                                       
Query: 301 ttcatagaatgtaccaaacaccattgcccccagatccactcattctcaaaaatgttatat 360
           |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 588 ttcatagaatctaccaaacaccattgcccccagagccactcattctcaaaaatgttatat 529

                                                                       
Query: 361 catgtcccactttccttaactgtctggtcttgctcctataaccatgcttatgtgcaaatt 420
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 catgtcccactttccataactgtctggtcttgctcctataaccatgcttatgtgcaaatt 469

                                                                       
Query: 421 tcccaccctgtgattttgccctataaagggggcttgagaaattggcccagacctggtcct 480
           |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 468 tcccaccctgtggttttgccctataaagggggcttgagaaattggcccagagctggtcct 409

                                                                       
Query: 481 acaaagcctccttatggagagacagccatggattcagctctgatatgtacacaaaataaa 540
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 408 acaaagcctccttatggagagacagccacggattcagctctgatatgtacacaaaataaa 349

                                                         
Query: 541 gcatacattaatttagccataatttggatcactgtgattaatatag 586
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gcatacattaatttagccataatttggatcactgtgattaatatag 303


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space:   562176
Effective search space used:   562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)