BAC Information

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BAC

Clone NameMSMg01-079N14
Chromosome14 (Build37)
Map Location 40,845,157 - 40,845,632
singlet/doubletsinglet
Overlap genenone
Upstream geneNrg3, LOC100040439
Downstream geneLOC218945, LOC100040470, LOC382876, Sh2d4b, Tspan14, 5730469M10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079N14.T7 (MSMg01no079_n14.b1)MSMg01-079N14.TJ (MSMg01no079_n14.g1)
ACCAG300832AG300833
length717715
length of high quality
(start - end)
557 (39 - 595)499 (67 - 565)
definitionCHROMAT_FILE: MSMg01no079_n14.b1 PHD_FILE: MSMg01no079_n14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:35 2005CHROMAT_FILE: MSMg01no079_n14.g1 PHD_FILE: MSMg01no079_n14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
CAATAATTCCCTCTGGCCCTGTGCTTTTTTATATGGGAGGTTTTTAATGA
CTTCTTTTATTTTCTTACGGGATATAGGCCTTTGTAGATAGTTTACCTGC
TTTTGATTTAATTTTGGTATGTGGTATCTGTCTAGAAAACCATCCATTTA
ATCTAGATTTTCCAGTTTTTTTGAGTATAGGCTTTTATAATCAGTTCTGA
TGATTTTTTGAATTTCTTCTGTTTCTGTTGTTATGTTTCCCTTTTCATTT
CTGATTTTGCTAATTTGGATACTGCCTCTGGGCCCTTTAGTTAGTTTGAC
TAGGGGGTTATCTATCTTGTTTCGCTCAGTAAACCATCTTTTGGTTTTGT
TGATTCTCTGCTTCTATTTGGTTGGTTTTGGCCCTGAGTTTACCTCTTTC
TTGCCTTCTCCTCCTTTTGAATGTGAGTGCTTCTTTTTGTTTTAGAGCTC
TAATGTGTGTAGTTCAGTTGCTGGTGTAATTAATTTCCAATTTCTTTACC
AGGGCACATAGTGCTATGAATTTTCCCCTTAGCACTGCTTTCATTGCGTC
CCATAAGTTTGGGTAGATTGCACCATAATTTGTATTGCATTCCAGAAAGA
CTTTAAATTCTTTTTTTTTTAAATTGGGTATATTCCTCATTTACCTTTCC
AATGCTATCCCAAAAGT
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTACGTACAAGGTAGATAAATGTGTGGAGTTCATA
CTGAATGCTGATTTTTTTTTTTTTTTACTGTAAATCTTAACTGTCAGGGA
CTTCTGACAGGCTCTTCATTTCTTTCTTATTTTTTATTAATCACTGTATT
AATTTACATTTCACATAATATCCCCCTTCCTGGTTACCCCTCCACCAGCC
CCCCATCCCATCCCCTCTCACTTCCCTCTCCTGTGCCTCTATGAGGGTGC
TCCTCCACTCATTCACCCACTCCCACCTCACCACTCTAGCATCCCCTCCC
CCTCTATCCCCCACCCCCACCATGCTGGGGCATCAAGTGTCCTTCCTTTT
CCATTGATGTCAGATAAGGCCATCGTCTGCTATGTATATATCTGGACTCC
TGGCTCCCTCCATGCATACTCTTTGTTTGGTGGTTTAGTCCCTGGGAGCT
GTGTGGTCCAGTTGATATTATTCTTATGGGGTTGCAATCCCCTTCACCTC
CTTCAGTCCTTCCGTTAGATCTTCCATTGGGACCCCTGTGCTCAATTCTA
TCCAGAGACCTCTCCAGTCTCTTCATTTCTCTGCTGCATGATTTGTGCCA
ATTTTAAACCTCTACCTTCTACATCAACACCATGTATTTTTGGCTTCTTT
CCACCTTTCTTTGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_n14.g1 MSMg01no079_n14.g1 CHROMAT_FILE:
MSMg01no079_n14.g1 PHD_FILE: MSMg01no079_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:35 2005
         (499 letters)



>mm_chr14_40844953_40845849
          Length = 897

 Score =  822 bits (425), Expect = 0.0
 Identities = 470/495 (94%), Gaps = 19/495 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   tacaaggtagataaatgtgtggagttcatactgaatgctgatttttttttttttttactg 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 205 tacaaggtagataaatgtgtggagttcatactgaatgctgatttttttttttttt--ctg 262

                                                                       
Query: 65  taaatcttaactgtcagggacttctgacaggctcttcatttctttcttattttttattaa 124
           |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 263 taaatcttaactgtcagggacttctgacaggctcttcatttccttcttactttttattaa 322

                                                                       
Query: 125 tcactgtattaatttacatttcacataatatcccccttcctggttacccctccaccagcc 184
           |||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 323 tcactgtattcatttacatttcacatggtatcccccttcctggttacccctccaccagcc 382

                                                                       
Query: 185 ccccatcccatcccctctcacttccctctcctgtgcctctatgagggtgctcctccactc 244
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ccctatcccatcccctctcacttccctctcctgtgcctctatgagggtgctcctccactc 442

                                                                       
Query: 245 attcacccactcccacctcaccactctagcatcccctccccctctatcccccacccccac 304
           ||||||||||||||||||||||||||||||||    ||||||     |||||        
Sbjct: 443 attcacccactcccacctcaccactctagcat----tccccc-----ccccc-------- 485

                                                                       
Query: 305 catgctggggcatcaagtgtccttccttttccattgatgtcagataaggccatcgtctgc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 catgctggggcatcaagtgtccttccttttccattgatgtcagataaggccatcgtctgc 545

                                                                       
Query: 365 tatgtatatatctggactcctggctccctccatgcatactctttgtttggtggtttagtc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tatgtatatatctggactcctggctccctccatgcatactctttgtttggtggtttagtc 605

                                                                       
Query: 425 cctgggagctgtgtggtccagttgatattattcttatggggttgcaatccccttcacctc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 cctgggagctgtgtggtccagttgatattattcttatggggttgcaatccccttcacctc 665

                          
Query: 485 cttcagtccttccgt 499
           |||||||||||||||
Sbjct: 666 cttcagtccttccgt 680


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 897
Length adjustment: 10
Effective length of query: 489
Effective length of database: 887
Effective search space:   433743
Effective search space used:   433743
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)