Query= MSMg01no079_o14.b1 MSMg01no079_o14.b1 CHROMAT_FILE:
MSMg01no079_o14.b1 PHD_FILE: MSMg01no079_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:40 2005
(507 letters)
>mm_chr14_33215472_33216378
Length = 907
Score = 946 bits (489), Expect = 0.0
Identities = 498/501 (99%), Gaps = 1/501 (0%)
Strand = Plus / Plus
Query: 5 gaattcattatgtaccctaggctggccttcaactccttattgtcctgcctcagactccca 64
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 205 gaattcattatgtagcctaggctggccttcaactccttatcgtcctgcctcagactccca 264
Query: 65 agtgctgagatttatagggataggccaccgcgtccagttttctccctatttttcaaagtt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agtgctgagatttatagggataggccaccgcgtccagttttctccctatttttcaaagtt 324
Query: 125 atatttagttcaccaattcttttatcatattcttttctgatatgttttgagatattattt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atatttagttcaccaattcttttatcatattcttttctgatatgttttgagatattattt 384
Query: 185 gcccataaaaacttttgccataacccacaagttttgctctgaggtatgtttaagtgaatt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcccataaaaacttttgccataacccacaagttttgctctgaggtatgtttaagtgaatt 444
Query: 245 taatttacttgtccacactttcatactcatatttaatggactttggtcatatctcacatt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taatttacttgtccacactttcatactcatatttaatggactttggtcatatctcacatt 504
Query: 305 gtcctcttatgtctcccctttccactgaaccccctttcctcctttcctataaactcctct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtcctcttatgtctcccctttccactgaaccccctttcctcctttcctataaactcctct 564
Query: 365 cccccatacatgtctttttgctgttgtttttgacctacagtatttaattacagttgcctg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cccccatacatgtctttttgctgttgtttttgacctacagtatttaattacagttgcctg 624
Query: 425 actgggcacatatggaagattacttgcttaactatttactagtggatctagcactgagga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 actgggcacatatggaagattacttgcttaactatttactagtggatctagcactgagga 684
Query: 485 atatgccacgccccccccccc 505
||||||||| |||||||||||
Sbjct: 685 atatgccac-ccccccccccc 704
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no079_o14.g1 MSMg01no079_o14.g1 CHROMAT_FILE:
MSMg01no079_o14.g1 PHD_FILE: MSMg01no079_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:40 2005
(477 letters)
>mm_chr14_33368309_33369185
Length = 877
Score = 907 bits (469), Expect = 0.0
Identities = 475/477 (99%)
Strand = Plus / Minus
Query: 1 ctatttccattgtgttcaaaaagatgtataatgatcacaaagaactttaaagatgcctta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ctatttccattgtgttcaaaaagatgtataatgatcacaaagaactttaaagatgcctta 618
Query: 61 cagacaggacaagaagttgtacaaaatgtgcacaatgaaaatataatctctactgggtaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 cagacaggacaagaagttgtacaaaatgtgcacaatgaaaatataatctctactgggtaa 558
Query: 121 caacccatctatgactattgatattcacctgattcaatctcagatttctataactgccta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 caacccatctatgactattgatattcacctgattcaatctcagatttctataactgccta 498
Query: 181 gactggagtttcaataatggcgaattgttgaatattatggacgtctcaatccaaacactt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gactggagtttcaataatggcgaattgttgaatattatggacgtctcaatccaaacactt 438
Query: 241 aagacaaatcatctcgggcggtttcaaattaaaagcttgtaaaatatgtaacctctccta 300
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aagacaaatcatctcgggcagtttcaaattaaaagcttgtaaaatatgtaacctctccta 378
Query: 301 gtttttgcaattaatagggtacatctgcaattagcctgacttactgaatgtagtactgtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gtttttgcaattaatagggtacatctgcaattagcctgacttactgaatgtagtactgtt 318
Query: 361 gtcattaaaagatgtctgaggaagtgctgccgttattatggaggctcaggagaccaatcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gtcattaaaagatgtctgaggaagtgctgccgttattatggaggctcaggagaccaatcc 258
Query: 421 ctcctatagggcaaacagtggactggtagaaaacaacagccataaatcacactgtca 477
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ctcctagagggcaaacagtggactggtagaaaacaacagccataaatcacactgtca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space: 404889
Effective search space used: 404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
