BAC Information

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BAC

Clone NameMSMg01-080J16
Chromosome14 (Build37)
Map Location 19,952,894 - 19,953,275
singlet/doubletsinglet
Overlap genenone
Upstream geneNr1d2, LOC632287, Rpl15, Nkiras1, Ube2e1, LOC627717, LOC238963, Ube2e2, LOC627741, LOC100042299, LOC675069, LOC100042322, LOC632470, EG632477, EG632498
Downstream geneEG667341, LOC667344, LOC619996, EG434616, LOC675165, 1700110I01Rik, EG664814, LOC100039452, LOC100038983, LOC100039441, EG432825, LOC673583, EG664855, Nid2, 2700060E02Rik, LOC100039534, Gng2, 1810063B07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080J16.T7 (MSMg01no080_j16.b1)MSMg01-080J16.TJ (MSMg01no080_j16.g1)
ACCAG301401AG301402
length700690
length of high quality
(start - end)
385 (41 - 425)235 (74 - 308)
definitionCHROMAT_FILE: MSMg01no080_j16.b1 PHD_FILE: MSMg01no080_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:34 2005CHROMAT_FILE: MSMg01no080_j16.g1 PHD_FILE: MSMg01no080_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:34 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AATTGTTCTCCAACATATTAGATGTTACAGGCAGAGCAGAGTCATATAAC
GTTATCTGTATCCTGTGTAGGCTCACCAGCTAATGTACAAGGATTGGACA
GTGTTCCAGTACCACAGTCACAGAAAAACCTATCAGGTCTAATGAATTCT
ACACATGATGTCATTTTTTAACAGCCAAGTAATACTCAATTGTGTAAATG
TACCACAGTTTCTTTATTCCTTCTTCTGTTAAAGGACACATAGGCTATTT
TCAGTTTCTGGTTAATATAATTAGAGCAAAAATAACATAGTTGAGCATGT
CTTTATGGTAAAATTAAGCATCCTCAGGGTATAGATCCAAGTTGGATCTT
GAAGTACACCGATTCTCAACTTTCTGAGGAACCACCATATTGATTCTAAT
AATGGAACTGCAAGTTTGCACTCCCACCAGCAACGGAGGACTGTTCTTCC
TGTTTCATAACCTCACTTCTGTTGCTGATTTCTGATAGGTCTGACCTTTT
AAGTTCCTCTGTCATTTCCCTTGCAACTTTGAACACTCCCTTTTAACCAA
GTGCACCTACCGTTTTCGATTTTTTTTATTGTCACGCACATCTCCTCCTT
TGCTTTTTTTTCTTGCCCTTTCCCTTTGTTTCTTCCCCCCCTCCCTTTTT

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTAGGGCTATAGCATTTCCTTCACCAA
GTTCAGGATTTGATTATCAGCCTCCAAAAATAAACGTGTAATCAAATCTC
CTGAATTAATTCCAAAGTTACTCTCAGTTAGAAAGAGTAAATAATAAATA
ATGAATTACCTTTGACCTGAAATGGGCCTTCTTTACACAGTTATGAGTAA
ATGAGATCCCAGTATTAACTTGTTTTTTTTCTAGTAAATACTCTTCTCTC
TATCTTGGGAGAATATTATGCCAAAAGTATCATGTCAATCAATAGGGTTC
TGCTGTCAAAAACACTTATCATCTTCATATATTAGTTATATGACCTTGGG
GGAAGTTCCTTTAAGTCTATAAGCCTTAGTTCCTGGATCTGTCAATGGAA
ATAAACAGATAGTACTGACATGAACGCCATACTATATGAGATATCTAGCT
AGACCTCAGTCTTTTTTAAAAGTCCTTCAAAGTCACCCTGAGTGTGCACA
TATATGCTTGTTCTCCTTCCTATCAGAAAAGCAAAACAAAGATTCACTCT
GCCTTCCGTTCCCTGCTCGCATCGTGGGTAGCTTGTACATGGATTCCGCC
TGTAATTTGCACCTTATCCACAATACCCTCTTTGGTACTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_j16.b1 MSMg01no080_j16.b1 CHROMAT_FILE:
MSMg01no080_j16.b1 PHD_FILE: MSMg01no080_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:34 2005
         (385 letters)



>mm_chr14_19952691_19953475
          Length = 785

 Score =  503 bits (260), Expect = e-147
 Identities = 353/384 (91%), Gaps = 4/384 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaattgttctccaacatattagatgttacaggcagagcagagtcatataacgtt 63
           |||||||||||||||| |||||||| ||||||||||||  ||||||||||| || |||||
Sbjct: 204 ggaattcaattgttctgcaacatatgagatgttacaggtggagcagagtcacatgacgtt 263

                                                                       
Query: 64  atctgtatcctgtgtaggctcaccagctaatgtacaaggattggacagtgttccagtacc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||
Sbjct: 264 atctgtatcctgtgtaggctcaccagctaatgtacaaggattggacagtattctggtacc 323

                                                                       
Query: 124 acagtcacagaaaaacctatcaggtctaatgaattctacacatgatgtcattttttaaca 183
           |||||||||||||||||||||| | ||||||||||||||||||||||||||| || ||||
Sbjct: 324 acagtcacagaaaaacctatcatgcctaatgaattctacacatgatgtcattatt-aaca 382

                                                                       
Query: 184 gccaagtaatactcaattgtgtaaatgtaccacagtttctttattccttcttc-tgttaa 242
           ||  |||||||||||||||||||||||||||||| ||||||||||  |||||| | || |
Sbjct: 383 gctgagtaatactcaattgtgtaaatgtaccacaatttctttatttattcttcct-ttga 441

                                                                       
Query: 243 aggacacataggctattttcagtttctggttaatataattagagcaaaaataa-catagt 301
           |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 442 aggacacataggctattttcagtttctggttaatataactagagcaaaaataaacatagt 501

                                                                       
Query: 302 tgagcatgtctttatggtaaaattaagcatcctcagggtatagatccaagttggatcttg 361
           |||||||||| ||||| |||||||||||||||| ||||| |||| |||||||||||||||
Sbjct: 502 tgagcatgtccttatgctaaaattaagcatccttagggtgtagacccaagttggatcttg 561

                                   
Query: 362 aagtacaccgattctcaactttct 385
           ||||| |  |||||||||||||||
Sbjct: 562 aagtagattgattctcaactttct 585


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space:   291776
Effective search space used:   291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)