BAC Information

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BAC

Clone NameMSMg01-080N11
Chromosome14 (Build37)
Map Location 109,252,218 - 109,252,565
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668757, EG668761
Downstream geneSlitrk1, LOC640892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080N11.T7 (MSMg01no080_n11.b1)MSMg01-080N11.TJ (MSMg01no080_n11.g1)
ACCAG301582AG301583
length687690
length of high quality
(start - end)
362 (45 - 406)338 (71 - 408)
definitionCHROMAT_FILE: MSMg01no080_n11.b1 PHD_FILE: MSMg01no080_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:52 2005CHROMAT_FILE: MSMg01no080_n11.g1 PHD_FILE: MSMg01no080_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTACTGCCCCTGGTATTAACTGTCATTTTGAGTAAAAGTTAGGTC
ACTGCCCTTTACAGGAATCTACCATCACCAAGGAAGAAAGAAGTTTCTGA
CCGTAGGAGAAACCAGAATAGATACTTAGAATTATAGCTGAGTTACACCC
ATATACAGGAATTTACAATGGCTTAGGAAGTAGATAGGGCTGTGGTTTTA
GAGTACTGCATTATTCATGAGATGGTTAGCTAGAAAGGAACTCCCTAGCT
AGAACCATGACTTGTTTGTGAAAGCCCTTGCCCTATGAGTGAAAAGATCT
CACGCCTGGTTTCTAAGACTATAGCTGACCTTAGATAGGGCTGACTTTGT
CTCAGTTATTCCATTGCCCAGTTCCTGCCAGTCTTTGCATTTTCATTCCT
CTGTTTTGTGTAAGAGTCATTAAGCATCCGGTTACCTCATTTGCACCTTG
CTGGCACGTCACCCAACTTCCTTATTGTCCTCTGCCGAGAAAGTCCGATG
CTCGATCTGACCATTTATATTCAGATCCAACTCCACCTCTCTTGCGTGCT
TCTATCTGTCTATTCTTCCGACGCTTTGCCTTCCCACCACTATAGTCCCG
TTCCTTGCCCACTTTTTTGCCTTTAGCGCCTGTATAG
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTGTCTATCCCAGGGAGAGATTTGGAAAA
CTCTGAGTCAGAACCAGGTTCTTTCCACAAGGGAAATCTGGGGGTGATTT
TTTTCAATTCTTTTTTTCCTGTACATTTGTCAGTGGGTGGAATGATGGCA
ATTCTGTCTGCAATTCTTTAGTTCTTCCCTTACCCTTAATTTTTTTGTTA
TCAGCTGAATCTAGCCCAGCCCTAGGAACATTGCTATTTCAGTGATTTTG
CTTCTTTCACCTTATAATTTCTCTTTTTCCATTTCCCTCCCTCTTGATAG
ATCTAATTGCCCATGTTCTTCCTATCTTTGGTGTTTCACTAATTATTAGA
AAACATACAACTACTTTCCTTATCTCAAGGAATCATACTTTGTGCGAAAA
AATCATGTTGGAATAGAGGCTTTCAGTTAGGATCCTATCTGCTTGTAGTC
AACTTTAATTTCTCTATTATTGCAGCAGTTAGATCTTCCATTTAGATCAA
TTACTAGCTTCTCTCAAAGTTTCTTGAGTTATTTTCTTTCACCTAATGCC
AATACAGTTACTGCCCTTGAATTCCCGCCACCTTCCTTTGTCATTGTCGT
TGTTGCTGTTGCTAGTTGCTTATTCTCTCAATCTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_n11.g1 MSMg01no080_n11.g1 CHROMAT_FILE:
MSMg01no080_n11.g1 PHD_FILE: MSMg01no080_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:52 2005
         (338 letters)



>mm_chr14_109252185_109252927
          Length = 743

 Score =  553 bits (286), Expect = e-162
 Identities = 327/348 (93%), Gaps = 14/348 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgtctatcccagggagagatttggaaaactctgagtcagaaccaggttctttccacaa 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 tctgtctatcccagggagagatttggaaacctctgagtcagaaccaggttctttccacaa 322

                                                                       
Query: 61  gggaaatctgggggtgatttttttcaattcttttttt-----cctgtacatttgtcagtg 115
           ||||||||||||||| |||||||||||||||||||||     ||||||||||||||||||
Sbjct: 321 gggaaatctgggggtaatttttttcaattcttttttttttttcctgtacatttgtcagtg 262

                                                                       
Query: 116 ggtggaatgatggcaattctgtctgcaattctttagttcttcccttacccttaatttttt 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 ggtggaatgatggcaattctgtctgcaattctttagttcttcccttacccttagtttttt 202

                                                                       
Query: 176 tgtt--------atcagctgaatctagcccagccctaggaacattgctatttcagtgatt 227
           | ||        ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttttttttttatcagctgaatctagcccagccctaggaacattgctatttcagtgatt 142

                                                                       
Query: 228 ttgcttctttcaccttataa-tttctctttttccatttccctccctcttgatagatctaa 286
           ||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 141 ttgtttctttcaccttacaaatttctctttttccatttccctccctcttgatagatctaa 82

                                                           
Query: 287 ttgcccatgttcttcctatctttggtgtttcactaattattagaaaac 334
           ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 81  ttgcccatgttcttcctatctttggtgtttcactaattattaggaaac 34


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 743
Length adjustment: 9
Effective length of query: 329
Effective length of database: 734
Effective search space:   241486
Effective search space used:   241486
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)