BAC Information

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BAC

Clone NameMSMg01-080P14
Chromosome14 (Build37)
Map Location 109,665,363 - 109,819,437
singlet/doubletdoublet
Overlap genenone
Upstream geneEG668761, Slitrk1
Downstream geneLOC640892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080P14.T7 (MSMg01no080_p14.b1)MSMg01-080P14.TJ (MSMg01no080_p14.g1)
ACCAG301684AG301685
length694697
length of high quality
(start - end)
549 (45 - 593)384 (70 - 453)
definitionCHROMAT_FILE: MSMg01no080_p14.b1 PHD_FILE: MSMg01no080_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:02 2005CHROMAT_FILE: MSMg01no080_p14.g1 PHD_FILE: MSMg01no080_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,665,363 - 109,665,908)(109,819,057 - 109,819,437)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATT
CAAAATTGTTCCTGTAAAATATAATCATAACAATATAATCACAGATAAAA
TACTATGCTCCAATCAAGCTTTTCCAGCAAATCCACCATAAAAGCAGTCC
GAAAATAAGTAGAATTCAGAGGTTTCAGTGATAAGATTTTACATTAATGT
GCGATTTAACTGAATGGAATTGTCTTACAAATTACCTCATATGCAGAATA
TATTTCCTGCCATGATATTTGATCATAACCTATTGTGACCATCTATTTCT
GAGGTTAATTTAATATGACAACATTAAATATTGAGTTTCTATTATTAACC
CTCCTAATTTAATTTTATGCTCACTAAGAAACCTTCAAATACAAAGTTGG
TCATTTTCTATTAAAAACCTCCAGAAAGTAACTCTGGATCAGACTTTAGT
TTTATGCCTTTTTGTACACTAATTACATTAGTAGCCTTGCTCAGTGCATC
AAGCTTGATTTATCTGTGACTATTCTGGGGACACAGAGACACTTGATATT
TACAAATTAGACTGCTTAGCTTGATATGAACTCGGCACTAATGTTAAGGA
TTAAGTTGAGGCTTAGAGTGAAGACGTTTCTGGGCAGCTGGCCAACCAAT
CCTAAGCATGCCTTGTTCGCTGCATGCTCCATACGTCTTTTTTT
TGATGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTAAAGGGGAAAATGATAAAGGTTCTGGAGAT
TGGCAATTCTTGGTTGATGTTTCTGAAGAATATTTGTAAATCATGAATGC
TATTAGAGGTTAATATACAAAATGTACTAGAAATTCATATTGATAAATAA
GAAAAAGGAAAATAAAAATAAGACAAAAAGGAAAGCGGTATAAGCTTGGT
AAAATATGTCAAAGCCTTCTTTGAAATTGTAAAAATTTCAAAGTTTATTC
ACAGGGAGCATTTTATTATCATTTTTCTATTGCCAGCGACAGACTAGATA
ATGTTCAAATTATAAAACACAACTAAAGCAAAATTCATAACTAGGTAGAG
CTTTTGTCTAGTAGGTCTGCTACATGCTTACTAACTTGAATATTGAATTG
CCTTATAAAAAAAAGATTATGACCTCTAAAACAATAGAATTTCCATGTAG
AAAAACGTATTTCTTAGAAGAAATCTGGCTAGGCTAATTGTTGCTTATAT
AACTATATTTACCAGGGTAGGTGGAAGTGGGAAAGCATACTGGGATAAGG
AGGACCTTTTATGCCAAAGTCCCAAAGTTGTCGTAAAGGAATCTCTGCCA
CATATGATGGTTTAAACCACACGTAACAATACAATTTTCCATGTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_p14.b1 MSMg01no080_p14.b1 CHROMAT_FILE:
MSMg01no080_p14.b1 PHD_FILE: MSMg01no080_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:02 2005
         (549 letters)



>mm_chr14_109665162_109666110
          Length = 949

 Score = 1017 bits (526), Expect = 0.0
 Identities = 541/546 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   gaattcaaaattgttcctgtaaaatataatcataacaatataatcacagataaaatacta 61
           ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattcaaaattgtaagtgtaaaatataatcataacaatataatcacagataaaatacta 261

                                                                       
Query: 62  tgctccaatcaagcttttccagcaaatccaccataaaagcagtccgaaaataagtagaat 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tgctccaatcaagcttttccagcaaatccaccataaaagcagtccgaaaataagtagaat 321

                                                                       
Query: 122 tcagaggtttcagtgataagattttacattaatgtgcgatttaactgaatggaattgtct 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tcagaggtttcagtgataagattttacattaatgtgcgatttaactgaatggaattgtct 381

                                                                       
Query: 182 tacaaattacctcatatgcagaatatatttcctgccatgatatttgatcataacctattg 241
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 382 tacaaattacctcatatgcagaatagatttcctgccatgatatttgatcataacctattg 441

                                                                       
Query: 242 tgaccatctatttctgaggttaatttaatatgacaacattaaatattgagtttctattat 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tgaccatctatttctgaggttaatttaatatgacaacattaaatattgagtttctattat 501

                                                                       
Query: 302 taaccctcctaatttaattttatgctcactaagaaaccttcaaatacaaagttggtcatt 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 taaccctcctaatttaattttatgctcactaagaaaccttcaaatacaaagttggtcatt 561

                                                                       
Query: 362 ttctattaaaaacctccagaaagtaactctggatcagactttagttttatgcctttttgt 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 562 ttctattaaaaacctccagaaagtaactctggatcagactttagttttatgtctttttgt 621

                                                                       
Query: 422 acactaattacattagtagccttgctcagtgcatcaagcttgatttatctgtgactattc 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 acactaattacattagtagccttgctcagtgcatcaagcttgatttatctgtgactattc 681

                                                                       
Query: 482 tggggacacagagacacttgatatttacaaattagactgcttagcttgatatgaactcgg 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tggggacacagagacacttgatatttacaaattagactgcttagcttgatatgaactcgg 741

                 
Query: 542 cactaa 547
           ||||||
Sbjct: 742 cactaa 747


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space:   506121
Effective search space used:   506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no080_p14.g1 MSMg01no080_p14.g1 CHROMAT_FILE:
MSMg01no080_p14.g1 PHD_FILE: MSMg01no080_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:02 2005
         (384 letters)



>mm_chr14_109818857_109819640
          Length = 784

 Score =  667 bits (345), Expect = 0.0
 Identities = 372/381 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaaggggaaaatgataaaggttctggagattggcaattcttggttgatgtttctgaaga 60
           |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
Sbjct: 581 taaaggggaaaatgataaaggtgctggagattggcaattcttgtttgatgtttctgaaaa 522

                                                                       
Query: 61  atatttgtaaatcatgaatgctattagaggttaatatacaaaatgtactagaaattcata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 atatttgtaaatcatgaatgctattagaggttaatatacaaaatgtactagaaattcata 462

                                                                       
Query: 121 ttgataaataagaaaaaggaaaataaaaataagacaaaaaggaaagcggtataagcttgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ttgataaataagaaaaaggaaaataaaaataagacaaaaaggaaagcggtataagcttgg 402

                                                                       
Query: 181 taaaatatgtcaaagccttctttgaaattgtaaaaatttcaaagtttattcacagggagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 taaaatatgtcaaagccttctttgaaattgtaaaaatttcaaagtttattcacagggagc 342

                                                                       
Query: 241 attttattatcatttttctattgccagcgacagactagataatgttcaaattataaaaca 300
           ||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 341 attttcttatcatttttctattgtcagtgacagactagataatgttcaaattataaaaca 282

                                                                       
Query: 301 caactaaagcaaaattcataactaggtagagcttttgtctagtaggtctgctacatgctt 360
           |||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||
Sbjct: 281 caactaaagcaaaattcagaactaggtagagcttttgccaagtaggtctgctacatgctt 222

                                
Query: 361 actaacttgaatattgaattg 381
           |||||||||||||||||||||
Sbjct: 221 actaacttgaatattgaattg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 784
Length adjustment: 9
Effective length of query: 375
Effective length of database: 775
Effective search space:   290625
Effective search space used:   290625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)