BAC Information

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BAC

Clone NameMSMg01-081A10
Chromosome14 (Build37)
Map Location 8,759,367 - 8,759,898
singlet/doubletsinglet
Overlap geneFlnb
Upstream geneEG622781, LOC100041740, LOC100038847, LOC100042129, LOC100041770, LOC100042149, LOC544988, EG626456, LOC100041791, LOC100042164, LOC100042182, LOC100041808, LOC100042192, LOC100042207, EG432817, LOC100042217, LOC100041830, LOC100042235, EG545013, EG666947, LOC623215, LOC100042286, LOC666957, LOC100042263, LOC100042258, LOC100042272, LOC100041874, LOC100042304, LOC100041881, LOC100042312, LOC100041893, ENSMUSG00000058570, EG666976
Downstream geneDnase1l3, Abhd6, Rpp14, Pxk, Pdhb, Kctd6, Acox2, BC055107, Oit1, LOC667005, 4930452B06Rik, LOC100041948
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081A10.T7 (MSMg01no081_a10.b1)MSMg01-081A10.TJ (MSMg01no081_a10.g1)
ACCAG301724AG301725
length651695
length of high quality
(start - end)
162 (64 - 225)532 (64 - 595)
definitionCHROMAT_FILE: MSMg01no081_a10.b1 PHD_FILE: MSMg01no081_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:06 2005CHROMAT_FILE: MSMg01no081_a10.g1 PHD_FILE: MSMg01no081_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTTGCGCCGCTATACGACTCCTATTCAAACAAATCCGCGNAATTCTTTC
ATTACCCCTATTCACTGCTTCAGGACAAGTGCCTTGCTGAGCAACCAAAA
AGCCCCCCAGAATCCATGTTTACAAAAAAACAAAAAAACAAAAACAAACA
AAACACAAAAAAAAACAAAAAAACAAAAAAACCGGCATGCTACCTTGTGT
TTATAGATAAGTCCCAGTGCTTGGCGAATTGGCCACAGGTGGATTCCTTG
ATCTCACTGGCCAGCCAGCTTCATTTAATTACTGACATTAATGCCTTCAA
GAGACAAAAATACTAATTGAATCTTAATCTTGCCAAGACTAATGACCCCT
AATTCTGACCTTTGTCCCCCCCCTTGTTCAATTAANTTTTCCCCCCTCAA
AAGANNNTTCTNNNNNNTNNTNTNTTTTNCTTTATTTATCTTATCCCCNN
TNNNCCTTCCTCCTTTTCCCCCTTTCCCTCCTTTCCCTTTTTTCCCCCTC
TTTTCCTCACCATATTCTGAGAAGAAAAAAGGAGGGAGGGGGGGGCGGTT
TTTTTTTCTCCCTTCCCCCCCCCCCTTCTTTCTTTCCCTCCTCTCCCCCT
TCCCTCCTCTTCCTCCTTTTTTTTCTTTTTTTCCCCCCCCCTTTCTATTT
G
AGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXACGTGGGCTTTTGATTGAAAATGGCTTTATTTTTGTT
CAGTTTGCTTGTTGGTCCCTCAGGCCCTCCCACGAGGTATTTAGCTGTAA
GTTCTAGCTGAAGTGCTGTGCCAACCATAGTAGTCACACATTCCTCAGCC
TTGGGCTCTGATGGTGGCATCTACCCCAAGCACCGTGAGAGAGACTCTGT
GCTAGCCTGAGCACTGTGAGAGTCTGTGTTTGCCTGAGCCCCGTGAGAGT
CTGCGCTAGCTCATCCTGCATATGCTTGATGTAGCACTCGGTCTCCTCCT
TACCTCTCACACCCTGGGGTTATTTAAGTGTCGGGTTGTGAGTGCAGTTC
ACAGTGATGTGGTTCCATGGGCTTTCCTCTGAAGATTGCTTTGTCTTGAT
ACCCGCATGGAATGGCCCTGGTGTCAGGGCCCCCTCCAGAGGCATTGTCT
TTCTAGAAATAAAGTATTTCTCTCTGACTGTCCTCCCTCCATATCCCCTC
TCCTAGGTGGTCTGGACTTGGCTATTGAAGGACCCTCGAAAGCAGAGATC
AGCTGCATTGACAACAAAGACGGGACCTGTACAGTGACCTACCTACCCAC
CTTGCCAGGGGACTACAGCATTCTGGTCAAGTTCCATGACCAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_a10.g1 MSMg01no081_a10.g1 CHROMAT_FILE:
MSMg01no081_a10.g1 PHD_FILE: MSMg01no081_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:06 2005
         (532 letters)



>mm_chr14_8759167_8760098
          Length = 932

 Score = 1006 bits (520), Expect = 0.0
 Identities = 529/532 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acgtgggcttttgattgaaaatggctttatttttgttcagtttgcttgttggtccctcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acgtgggcttttgattgaaaatggctttatttttgttcagtttgcttgttggtccctcag 260

                                                                       
Query: 61  gccctcccacgaggtatttagctgtaagttctagctgaagtgctgtgccaaccatagtag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccctcccacgaggtatttagctgtaagttctagctgaagtgctgtgccaaccatagtag 320

                                                                       
Query: 121 tcacacattcctcagccttgggctctgatggtggcatctaccccaagcaccgtgagagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcacacattcctcagccttgggctctgatggtggcatctaccccaagcaccgtgagagag 380

                                                                       
Query: 181 actctgtgctagcctgagcactgtgagagtctgtgtttgcctgagccccgtgagagtctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actctgtgctagcctgagcactgtgagagtctgtgtttgcctgagccccgtgagagtctg 440

                                                                       
Query: 241 cgctagctcatcctgcatatgcttgatgtagcactcggtctcctccttacctctcacacc 300
           ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct: 441 cgctagcccatcctgcatatgcttgatgtagtactcggtctcctccttacctctcagacc 500

                                                                       
Query: 301 ctggggttatttaagtgtcgggttgtgagtgcagttcacagtgatgtggttccatgggct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctggggttatttaagtgtcgggttgtgagtgcagttcacagtgatgtggttccatgggct 560

                                                                       
Query: 361 ttcctctgaagattgctttgtcttgatacccgcatggaatggccctggtgtcagggcccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcctctgaagattgctttgtcttgatacccgcatggaatggccctggtgtcagggcccc 620

                                                                       
Query: 421 ctccagaggcattgtctttctagaaataaagtatttctctctgactgtcctccctccata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctccagaggcattgtctttctagaaataaagtatttctctctgactgtcctccctccata 680

                                                               
Query: 481 tcccctctcctaggtggtctggacttggctattgaaggaccctcgaaagcag 532
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcccctctcctaggtggtctggacttggctattgaaggaccctcgaaagcag 732


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space:   481284
Effective search space used:   481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)