BAC Information

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BAC

Clone NameMSMg01-081B07
Chromosome14 (Build37)
Map Location 63,097,262 - 63,097,535
singlet/doubletsinglet
Overlap geneLOC100042960
Upstream gene6330409N04Rik, LOC100042941, Trim13, Kcnrg, LOC668253, Dleu7, Rnaseh2b, Gucy1b2
Downstream genePpia-ps14_723.1, LOC545062, EG629059, E130113E03Rik, Ints6, LOC100042969, LOC668263, Wdfy2, LOC668268, EG432867, EG654465, EG654458, 2410125J01Rik, Defb42, LOC100042978, Ctsb, Fdft1, Neil2, Gata4, LOC100042988, LOC432868, Blk, LOC668293, BC065085
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081B07.T7 (MSMg01no081_b07.b1)MSMg01-081B07.TJ (MSMg01no081_b07.g1)
ACCAG301766AG301767
length754739
length of high quality
(start - end)
353 (43 - 395)273 (69 - 341)
definitionCHROMAT_FILE: MSMg01no081_b07.b1 PHD_FILE: MSMg01no081_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:10 2005CHROMAT_FILE: MSMg01no081_b07.g1 PHD_FILE: MSMg01no081_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGTAAGAGTGTCGCCTATTCAGTGACATTCAGAATAGCCTCTGGTGCT
ACACTATCACTTAGAATAAAAGCCAAGTCGCTCCCATATACAGGAATTTA
CAATGGTTTAGGAAGTAGATCTGGCTGTGGTTTTAGAGTGTTGCATTATT
CATGAGATGGTTAGCTAGAACGGAACTCCCTAGTTAGAACCATGACTTGG
GTGTGAAAGCCCTTGCCCTAGGAGAGTAAAGTTTTCACACCTGGCTTCTA
AGACTATAGCTGACCTTAGATAGGGCTGACTCTGTCTCAGTTATTTTATT
GGCCAGGTCCTGCCAGTCTTTGCGTTTTCATTCCTCTGTTCTGTGAAAGA
GTCATTAAGCATCCGGGTACCTCATTTGTACCTTGCGGGTATGTCACCTA
ACTTCCTTATTGGCTTCTGCATATAAAGTCTGATGGGCGTGCGAGAGATT
TCGCGCGGATTCGTCGTGGAGCGCGGCGTATGGGTGCGAGTTGGGCTGTG
GGGCCGCGCTGTGGGTGAGCCTGGTTCCGATGAATGCGGCGCGGGTGGTG
ATTGTGTGTACCCGGCAGATGTCGGCGCCGTGGGGGGGCATGTGTAGTTG
GGACGATGGCGGCGGGGTGGAGGTTTGGTTGTTGGTGGTGTGTGGTGCGG
GTAATGTGCGGTTGTACTGGAGCTGTGTGGCGTTTGTGTGGATGTGGGGG
AGTG
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACTGGACTCGAGCTNAACCCTAAAACTTTCAG
TTGCACTTTTTCCAATAAGATCGCCTTCTGTGGCGCTGGGCACTAGATCT
TCAATGTGCGAGTTTTGAGAGACGACATACAGTTCAATCTATAACAGAGA
GCAGGGAAAAGAAGAGTCGGGGCCTAAATTCTGACTCTTGGCAGGATTGG
GGCCTTTCAGGAGGGAGGAGGCCTCTTGATAGCCACGTTGCAGGTCCTGG
AGCCTGACTGTGTCCTCTTTCTATCAAGCCCAGCATAAGGCTTTCTGTAG
GTAGACGGTATAGGTAACCTGGTCTGTGGCTGACGGCTGGAAGTGCCGTG
GATTTCTGAGGTAATATACACTGGTGCGGCAGGAGGGACTGCTCGACAGC
ACACGTTGTTCGTCCCCACTCCTCTCCGGGCGTGACATGTGGAGCCCTAG
TTTTTTGTTAGATCCTGTGCGTGAGGCGGGGACGAGGGAGTAGTCGTCTT
GCAGGGGGTCGATGTAAAGGAGCCGATGGAATATCTAGATCATCAATAGC
GCAACACAGCGCGCGACGCTGCGCCAAAGAAGAAGAGGCTGGCCAAAAAC
AGAGTACGGATACACACCACACACAAAAAAAAACAAAAAACGGAAAAACA
CACAAACACCACAATAAACACAAGACATTGTACGACACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_b07.g1 MSMg01no081_b07.g1 CHROMAT_FILE:
MSMg01no081_b07.g1 PHD_FILE: MSMg01no081_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:10 2005
         (273 letters)



>mm_chr14_63097061_63097735
          Length = 675

 Score =  447 bits (231), Expect = e-130
 Identities = 263/274 (95%), Gaps = 2/274 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   ctggactcgagc-tnaaccctaaaactttcagttgcactttttc-caataagatcgcctt 59
           |||||||||||| | |||||||||||||| ||||||||||||||  |||||||| |||||
Sbjct: 202 ctggactcgagctttaaccctaaaacttttagttgcactttttctaaataagattgcctt 261

                                                                       
Query: 60  ctgtggcgctgggcactagatcttcaatgtgcgagttttgagagacgacatacagttcaa 119
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 262 ctgtggcgctgggcactagatcttcaatgtgtgagttttgagagacgacatacagttcaa 321

                                                                       
Query: 120 tctataacagagagcagggaaaagaagagtcggggcctaaattctgactcttggcaggat 179
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 322 tctataacagagagcagggaaaagaagagtcagggcctaaattctgactcttggcaggat 381

                                                                       
Query: 180 tggggcctttcaggagggaggaggcctcttgatagccacgttgcaggtcctggagcctga 239
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 382 tggggcctttcaggagggaggaggcctcttgatagccacattgcaggtcctggagtctga 441

                                             
Query: 240 ctgtgtcctctttctatcaagcccagcataaggc 273
           |||||||||||||||| |||||||||||||||||
Sbjct: 442 ctgtgtcctctttctaccaagcccagcataaggc 475


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 675
Length adjustment: 9
Effective length of query: 264
Effective length of database: 666
Effective search space:   175824
Effective search space used:   175824
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)