BAC Information

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BAC

Clone NameMSMg01-081G17
Chromosome14 (Build37)
Map Location 62,130,119 - 62,130,565
singlet/doubletsinglet
Overlap genenone
Upstream geneEG628836, Spata13, C1qtnf9, Mipep, LOC100043586, Tnfrsf19, Sacs, Sgcg, Arl11, EG432864, Ebpl, Kpna3, LOC100042933, EG432865
Downstream gene6330409N04Rik, LOC100042941, Trim13, Kcnrg, LOC668253, Dleu7, Rnaseh2b, Gucy1b2, LOC100042960
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081G17.T7 (MSMg01no081_g17.b1)MSMg01-081G17.TJ (MSMg01no081_g17.g1)
ACCAG302026AG302027
length715707
length of high quality
(start - end)
451 (38 - 488)244 (65 - 308)
definitionCHROMAT_FILE: MSMg01no081_g17.b1 PHD_FILE: MSMg01no081_g17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:37 2005CHROMAT_FILE: MSMg01no081_g17.g1 PHD_FILE: MSMg01no081_g17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCC
TCCATTCCATGGCAATGGTAGGTGTATCAAGTGAAGCAAGGTAGGGGCTG
CTGTCACCAGTGGCAGGAAGGTTCGGGCTCTCAACTCCTCAGTGCCTTAC
GGAAATGGAGATGTATTGTTAAATTTCCACTGTTGTGACAAAACACCCAA
CCAAAGCAACTTAAGGAGAGAAGATCTCATTTTAGCTCACATTTGGTGCG
TTCTAGCATGATGGGCAAGTCTTGGTATCAGGCACATGAGGTAGCAGATC
ACATGCCATTCACAGTCATGAAGAACAAAGCAGTGAACCCTGGTGTTCCG
CTTGCTTGCCTTTTTACGTGGCACAAGACTCGCCCCCCTGGGCTGGCTAC
ATTCAGATGGATCCTCCTTTGTAAAGCCCTCCTGGGAGTGTAGCACTCCT
AGAGAGTGTTACAGAGGTGTGTTTCCATGGTTACTGCCAAGCAAGTCAAG
CTGACCAGGAGTATTTGCCATCACAAGTACTATGACAGCTTTCTTTTTGA
AAGATGTAATTATTATTCTTATTTTGTCTAAGTGCTTCACTTCCATGTGT
ACCGCGAGCATGCCATGTACCTGCAGACCCCCAACAGGCAGTCAGATACT
CTACAGCTGGACTTAAGGATGCCTCGTAATGACCCACATGTTTTGCTGTT
CAACGACCCCTGCTC
TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTTCTTGACATGTTGGTTATGTATTTAGTAGGTTCC
AGAGATGAAGACACAGCTATCTTTGGACATTCTGGTAGGGCGTTTGTTTA
GCCAGAGAGATAGCTCAGTGGGTAAAGTGCTTGCTGCCAAACCTAACAAC
TTAAGTTCAACTCCAAAAACCATGTGGTCCTTTGGCCTCCAAATGCACTC
ACTCTATGGCACTTTTGCACACACACACCCCCAAAAAAATCCCTATTTAT
ATCCAGCGTGAGCTGTCTGTATTACAATGCTTTCACAACACCCTGTACTT
TGTTACTGCTGACAGTTGTGATTTGTAAGATTTTTTTTTTAAGATTTATT
TATTTATTATATGTAAGTACACTGTAGCTGTCTTCATACACTCCAGAAGA
GGGAGTCAGATCTCGTTACAGATGGTTTTGAGCCACCATGTGGTTGCTGG
GATTTGAACTCCGGACCTTCGGAAGAGCAGCCGGGCGCTCTTACCAACTG
AGCCATCTCACCAGCCCGATTTGTAAGATTATCAATGTCTGGTTTTACTC
ATTAATATCTAGCATGAAAAGTGCGTCTGCTTTATTCACGATAACATACT
TGATAATTATATAAATTTCAAATCCCCTGCTTATAGAGTAATTGTTGACT
ATTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_g17.b1 MSMg01no081_g17.b1 CHROMAT_FILE:
MSMg01no081_g17.b1 PHD_FILE: MSMg01no081_g17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:37 2005
         (451 letters)



>mm_chr14_62129915_62130765
          Length = 851

 Score =  758 bits (392), Expect = 0.0
 Identities = 434/448 (96%), Gaps = 3/448 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccctccattccatggcaatggtaggtgtatcaagtgaagcaaggtaggggctgc 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccctccattccctggcaatggtaggtgtatcaagtgaagcaaggtaggggctgc 264

                                                                       
Query: 65  tgtcaccagtggcaggaaggttcgggctctcaactcctcagtgccttacggaaatggaga 124
           ||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||| ||
Sbjct: 265 tgtcaccagtgacaggaaggttcgggctcccaactcctcagtgccttacagaaatgg-ga 323

                                                                       
Query: 125 -tgtattgttaaatttccactgttgtgacaaaacacccaaccaaagcaacttaaggagag 183
            ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 324 atgtattgttaaatttccactgttgtgacaaaacacccaaccaaggcaacttaaggagag 383

                                                                       
Query: 184 aagatctcattttagctcacatttggtgcgttctagcatgatgggcaagtcttggtatca 243
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaggtctcattttagctcacatttggtgcgttctagcatgatgggcaagtcttggtatca 443

                                                                       
Query: 244 ggcacatgaggtagcagatcacatgccattcacagtcatgaagaacaaagcagtgaaccc 303
           |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 444 ggcacatgaggtagcagatcacataccattcacagtcaggaagaacaaagcagtgaaccc 503

                                                                       
Query: 304 tggtgttccgcttgcttgcctttttacg-tggcacaagactcgcccccctgggctggcta 362
           ||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 504 tggtgttccccttgcttgcctttttatggtggcacaagactcgcccccctgggctggcta 563

                                                                       
Query: 363 cattcagatggatcctcctttgtaaagccctcctgggagtgtagcactcctagagagtgt 422
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cattcagatggattctcctttgtaaagccctcctgggagtgtagcactcctagagagtgt 623

                                       
Query: 423 tacagaggtgtgtttccatggttactgc 450
           ||||||||||||||||||||||||||||
Sbjct: 624 tacagaggtgtgtttccatggttactgc 651


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space:   370881
Effective search space used:   370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)