BAC Information

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BAC

Clone NameMSMg01-081I19
Chromosome14 (Build37)
Map Location 32,216,831 - 32,308,877
singlet/doubletdoublet
Overlap geneSh3bp5, Mettl6, Eaf1
Upstream geneCacna1d, Dcp1a, Tkt, Prkcd, EG665466, Rft1, Sfmbt1, Tmem110, Mustn1, Itih4, Itih3, Itih1, Nek4, Spcs1, Glt8d1, Gnl3, Pbrm1, EG432834, Nt5dc2, Stab1, Nisch, Tnnc1, Sema3g, Phf7, Bap1, Dnahc1, Capn7
Downstream geneColq, Hacl1, Btd, Ankrd28, Galntl2, Dph3, Oxnad1, Msmb, Ncoa4, Timm23, Parg, LOC665601, Ogdhl, 1700024G13Rik, Chat, Slc18a3, LOC100040834
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081I19.T7 (MSMg01no081_i19.b1)MSMg01-081I19.TJ (MSMg01no081_i19.g1)
ACCAG302126AG302127
length714714
length of high quality
(start - end)		603 (60 - 662)400 (62 - 461)
definitionCHROMAT_FILE: MSMg01no081_i19.b1 PHD_FILE: MSMg01no081_i19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:47 2005CHROMAT_FILE: MSMg01no081_i19.g1 PHD_FILE: MSMg01no081_i19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,308,275 - 32,308,877)(32,216,831 - 32,217,230)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAA
AGATACCGGGGACACAAGGGAGGAGAAATGGGCATCGCTACTAAAGGAGA
AAAGTTTGGCTTAAGGGCTGGGAAGGGGAATTTGAAATAAAGGGGCTATG
ACTTTCTGAAGTGGTATTTGAGACTGTAAAGTAAAAGAATAGTTGGCAGC
AATCAGAGGTTTGGTTTGGGAGAAGAGATTTCAAAGTAAAAGAGCAGATC
GAAGTTCCAGAGGCTAAGGGATGAGAGGTAAGGAAAGCGACGCTTTCGAG
CCGGGATTAGTCAGGGGAGTCTGGGCTTGCACGTGGCGGCCAGGGAGCCC
CAAGTGAACCTGGAGGGGCGCTCACTCACAGCGAATCGTGTGGAAGGAGG
CCCGCGGCCGCTTCTCGAAGCTTTCCCCTAGCCGCAGACAGTGTTCCTCC
CGGTCCAGCAGCGGGTTCGCCGTGCCGTTCATGGCCTTGCACTTGCCCGG
CACCCGGATTGGAGCTCTCCTCGCGCGGCCGCAGTCCCCCCGGATCCCCG
CGCAAGCGGCCCGCAGGACCGCGCTCCCGGGACACCGCTCCGGAGCGCGC
ACTGAACCAAGTCCGCGCCCACCCGGGGCCGGAAACCAATCTACTCCGCG
TCTCGAGAGACTCTGCGTAAGTAAGGCCGCTGCACTTCCGGTATTGGGGA
GGGACTTCCGTCTC

TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTTCCGAAATTCTGTGTGGGGCTGACCAGCTCCCAGCAGTTTTGTTTG
TGGGAATCATAGGCCAGGGAAAAATCTCCCGTTGTTTTTTTATCGGCATG
AGATCTCCGGGCTTCCCGCCCGGCACAGCATGCACACACGGAGTTCTCTT
CAACACCAAACTCTTCACTCATGCCTGAACCAGGCTCATGCCCAGCTAAG
CAATGGGTCCCTGCAAAACAGGCCTGCATGACTCCACAGGCGTGGGTCAG
AAGCCCAAAGGAAGGTTGGGTAATACCCCAAACTTTCCTGATAGTACCTC
ACTGCGGGCTCCTGCTTCTGTAGGGTCCAGATTTAACCTATAAAAATAAA
TACGAGAGGCCTGGAGAGTGGGCTGGGGGTGCGGGTAGGGGTGGGGGCTA
AGAGTGCATACTGCTCGTAGGGCAATTCCTGGAAAGAAGTTGAGGTTGAT
TGACTGTTACACACCAAGTGATGTGCTGAGGCTGCAATGCTTTATGTCCC
ACCCCATTTGCCTTAACTTATGTTAGCTGTAAGCTTCCCCCCCCCCCCAT
ATAATCCATTCACTGACTAGCCCCCATACCATTATCCTGTGACTAAAACA
AAAAAACCCTTCTGGAATTCATTTCCTTCACCCAACTCCTTTCTCTCTAT
ACCCCCTCACTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_i19.b1 MSMg01no081_i19.b1 CHROMAT_FILE:
MSMg01no081_i19.b1 PHD_FILE: MSMg01no081_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:47 2005
         (603 letters)



>mm_chr14_32308075_32309077
          Length = 1003

 Score = 1158 bits (599), Expect = 0.0
 Identities = 602/603 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggacacaagggaggagaaatgggcatcgctactaaaggagaaaagtttggcttaagggct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 ggacacaagggaggagaaatgggcatcgctactaaaggagaaaagtttggcttaagggct 744

                                                                       
Query: 61  gggaaggggaatttgaaataaaggggctatgactttctgaagtggtatttgagactgtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gggaaggggaatttgaaataaaggggctatgactttctgaagtggtatttgagactgtaa 684

                                                                       
Query: 121 agtaaaagaatagttggcagcaatcagaggtttggtttgggagaagagatttcaaagtaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 agtaaaagaatagttggcagcaatcagaggtttggtttgggagaagagatttcaaagtaa 624

                                                                       
Query: 181 aagagcagatcgaagttccagaggctaagggatgagaggtaaggaaagcgacgctttcga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aagagcagatcgaagttccagaggctaagggatgagaggtaaggaaagcgacgctttcga 564

                                                                       
Query: 241 gccgggattagtcaggggagtctgggcttgcacgtggcggccagggagccccaagtgaac 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gccgggattagccaggggagtctgggcttgcacgtggcggccagggagccccaagtgaac 504

                                                                       
Query: 301 ctggaggggcgctcactcacagcgaatcgtgtggaaggaggcccgcggccgcttctcgaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ctggaggggcgctcactcacagcgaatcgtgtggaaggaggcccgcggccgcttctcgaa 444

                                                                       
Query: 361 gctttcccctagccgcagacagtgttcctcccggtccagcagcgggttcgccgtgccgtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gctttcccctagccgcagacagtgttcctcccggtccagcagcgggttcgccgtgccgtt 384

                                                                       
Query: 421 catggccttgcacttgcccggcacccggattggagctctcctcgcgcggccgcagtcccc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 catggccttgcacttgcccggcacccggattggagctctcctcgcgcggccgcagtcccc 324

                                                                       
Query: 481 ccggatccccgcgcaagcggcccgcaggaccgcgctcccgggacaccgctccggagcgcg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ccggatccccgcgcaagcggcccgcaggaccgcgctcccgggacaccgctccggagcgcg 264

                                                                       
Query: 541 cactgaaccaagtccgcgcccacccggggccggaaaccaatctactccgcgtctcgagag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cactgaaccaagtccgcgcccacccggggccggaaaccaatctactccgcgtctcgagag 204

              
Query: 601 act 603
           |||
Sbjct: 203 act 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space:   588849
Effective search space used:   588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no081_i19.g1 MSMg01no081_i19.g1 CHROMAT_FILE:
MSMg01no081_i19.g1 PHD_FILE: MSMg01no081_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:47 2005
         (400 letters)



>mm_chr14_32216631_32217430
          Length = 800

 Score =  719 bits (372), Expect = 0.0
 Identities = 393/400 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctgtgtggggctgaccagctcccagcagttttgtttgtgggaatcataggccagggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctgtgtggggctgaccagctcccagcagttttgtttgtgggaatcataggccagggaa 260

                                                                       
Query: 61  aaatctcccgttgtttttttatcggcatgagatctccgggcttcccgcccggcacagcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatctcccgttgtttttttatcggcatgagatctccgggcttcccgcccggcacagcat 320

                                                                       
Query: 121 gcacacacggagttctcttcaacaccaaactcttcactcatgcctgaaccaggctcatgc 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcacacaccgagttctcttcaacaccaaactcttcactcatgcctgaaccaggctcatgc 380

                                                                       
Query: 181 ccagctaagcaatgggtccctgcaaaacaggcctgcatgactccacaggcgtgggtcaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccagctaagcaatgggtccctgcaaaacaggcctgcatgactccacaggcgtgggtcaga 440

                                                                       
Query: 241 agcccaaaggaaggttgggtaataccccaaactttcctgatagtacctcactgcgggctc 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcccaaaggaagggtgggtaataccccaaactttcctgatagtacctcactgcgggctc 500

                                                                       
Query: 301 ctgcttctgtagggtccagatttaacctataaaaataaatacgagaggcctggagagtgg 360
           |||||| |||||||||||||||||||||||||||||||||||||||||  ||||||| ||
Sbjct: 501 ctgcttttgtagggtccagatttaacctataaaaataaatacgagagggttggagagcgg 560

                                                   
Query: 361 gctgggggtgcgggtaggggtgggggctaagagtgcatac 400
           ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 561 gctgggggtgcgggtaggggtgggggctaagagcgcatac 600


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space:   309281
Effective search space used:   309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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