BAC Information

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BAC

Clone NameMSMg01-081N22
Chromosome14 (Build37)
Map Location 14,921,421 - 14,921,863
singlet/doubletsinglet
Overlap geneAtxn7
Upstream geneEG328354, Synpr, A430083B19Rik, EG382844, LOC100042045, Gm281, Thoc7
Downstream genePsmd6, Olfr720, LOC667125, LOC100042543, Olfr31, Il3ra, LOC627139, Olfr721-ps1, LOC667152, LOC100042147, Slc4a7, Nek10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081N22.T7 (MSMg01no081_n22.b1)MSMg01-081N22.TJ (MSMg01no081_n22.g1)
ACCAG302372AG302373
length760728
length of high quality
(start - end)
304 (45 - 348)443 (75 - 517)
definitionCHROMAT_FILE: MSMg01no081_n22.b1 PHD_FILE: MSMg01no081_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:12 2005CHROMAT_FILE: MSMg01no081_n22.g1 PHD_FILE: MSMg01no081_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGC
GGAATTCTCTGTTTACACCCGTTCCCGATTTTTTAATAGGGCTATTTGGT
TATCTGGAGTCTTTGTATATATTGGATATTAGCCCTCTATCAGATAGAGG
AGTGGTAAAGATCTTTTCCCAATTTGTTGGTTGTCATTTTGTCCTCTTGA
CACTGTCCTTTGCCTTACAAAAGCGTTGCAATTTTATGAAGTCCCATTTG
TCAATTCTTGATCTTAGAGCATAAGCCATTAGTGTTCAGTTCAGGAATTT
TCCCCCTGCGCCCATGTGTTCAAGGCTCTTCCTCACTTTCTCCTCTTTAA
GTTTCAATATACCGGTTTTCAACGGGAAGCTTTATTAACCACTCATGAAC
TTGACCTTTATACAAGGAGATACAAAGGTGATTTTTCCCCCCCCCTCACA
CGCTACTAAAAATTTGAACCACAAACCAATTGTTTTCAAATGCTGCCCTT
TTTTCCATCTGCAATGGATTTAAGCTCCTTCTGTCTAACAACATATACCA
AAATATTATTTACCTCCTAATTTAATATTTTCACTTTTTTTTTTCTATAT
CTCCCTTTATTCTATACCTAATTTTAAACTGTAACCAATCTTTTTTTCAC
TATATATTTTTTATACACTTCCCCAACACCCTCCATCTCTTATCGTTAGT
GCTCAACCTACCTTACTATTATTATAACATCACCCTCCCTCTACATAACA
TCCATCCTAA
CCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGTGGCATCATCTTGGTCCCTCTAGA
TCTCTTCATGCTTTGCTCCTTGTAGAAACTGCATTGACTGTGAGGTCTAA
GTTTCAAACAGGATAAAAGAGGTCAGGTTTATACACTGGGTTTTTTGTAC
AAACTTGGCTCGCTGTTAACTCTGCTAGCTTTTCTTAGTGGTTCAAACAA
AATGTCAAAGGCCTTCCCAGAGCCTGTGCATACTCAGGTAGATCGAGGCT
CTTCTCCCATCCCTCTGGAGTAACAGGGCTCTCATTTAATGCATTCCCAC
TTTCCTGCAACAGCATGACGCCCTCTGTGAAGGTAGAAAAGATGCATCCG
AAGATGGATGGCACACTACTGAAATCCACAGTGGGGCCAGCCTGTCCTGC
TACTATGAGCTCTGCAGTCAAGCCTGGCCTTAACTGTCCCTCAATACCAA
AGCCAACCTTGCCTTCACCCGGACAGATTCTGAACCGTCTAGGTCTTCCT
GCAATGCCTACTCTGGAAAAGAAATCTGAAAACAGTTCTTATAACAGGAA
ATTTTTAAATAATAGATTATCATGTAACATCCCACTTCTTTTCTCAAATT
TTCTGTGTACAGAAAGTCGGCCGCATACATTGGATTCTTTTTATTAGCCA
ATTTTTCTTATTTACTTTTCACATGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_n22.g1 MSMg01no081_n22.g1 CHROMAT_FILE:
MSMg01no081_n22.g1 PHD_FILE: MSMg01no081_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:12 2005
         (443 letters)



>mm_chr14_14921221_14922063
          Length = 843

 Score =  857 bits (443), Expect = 0.0
 Identities = 443/443 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtggcatcatcttggtccctctagatctcttcatgctttgctccttgtagaaactgcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtggcatcatcttggtccctctagatctcttcatgctttgctccttgtagaaactgcat 260

                                                                       
Query: 61  tgactgtgaggtctaagtttcaaacaggataaaagaggtcaggtttatacactgggtttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgactgtgaggtctaagtttcaaacaggataaaagaggtcaggtttatacactgggtttt 320

                                                                       
Query: 121 ttgtacaaacttggctcgctgttaactctgctagcttttcttagtggttcaaacaaaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtacaaacttggctcgctgttaactctgctagcttttcttagtggttcaaacaaaatg 380

                                                                       
Query: 181 tcaaaggccttcccagagcctgtgcatactcaggtagatcgaggctcttctcccatccct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaaaggccttcccagagcctgtgcatactcaggtagatcgaggctcttctcccatccct 440

                                                                       
Query: 241 ctggagtaacagggctctcatttaatgcattcccactttcctgcaacagcatgacgccct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctggagtaacagggctctcatttaatgcattcccactttcctgcaacagcatgacgccct 500

                                                                       
Query: 301 ctgtgaaggtagaaaagatgcatccgaagatggatggcacactactgaaatccacagtgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgtgaaggtagaaaagatgcatccgaagatggatggcacactactgaaatccacagtgg 560

                                                                       
Query: 361 ggccagcctgtcctgctactatgagctctgcagtcaagcctggccttaactgtccctcaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggccagcctgtcctgctactatgagctctgcagtcaagcctggccttaactgtccctcaa 620

                                  
Query: 421 taccaaagccaaccttgccttca 443
           |||||||||||||||||||||||
Sbjct: 621 taccaaagccaaccttgccttca 643


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 843
Length adjustment: 10
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)