BAC Information

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BAC

Clone NameMSMg01-082L09
Chromosome14 (Build37)
Map Location 14,921,421 - 14,922,034
singlet/doubletsinglet
Overlap geneAtxn7
Upstream geneEG328354, Synpr, A430083B19Rik, EG382844, LOC100042045, Gm281, Thoc7
Downstream genePsmd6, Olfr720, LOC667125, LOC100042543, Olfr31, Il3ra, LOC627139, Olfr721-ps1, LOC667152, LOC100042147, Slc4a7, Nek10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082L09.T7 (MSMg01no082_l09.b1)MSMg01-082L09.TJ (MSMg01no082_l09.g1)
ACCAG303015AG303016
length703705
length of high quality
(start - end)
639 (40 - 678)614 (69 - 682)
definitionCHROMAT_FILE: MSMg01no082_l09.b1 PHD_FILE: MSMg01no082_l09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:15 2005CHROMAT_FILE: MSMg01no082_l09.g1 PHD_FILE: MSMg01no082_l09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CTGTTTAGATCCGTTCCCGATTTTTTAATAGGGCTATTTGGTTATCTGGA
GTCTTTGTATATATTGGATATTAGCCCTCTATCAGATAGAGGAGTGGTAA
AGATCTTTTCCCAATTTGTTGGTTGTCATTTTGTCCTCTTGACACTGTCC
TTTGCCTTACAAAAGCGTTGCAATTTTATGAAGTCCCATTTGTCAATTCT
TGATCTTAGAGCATAAGCCATTAGTGTTCAGTTCAGGAATTTTCCCCCTG
CGCCCATGTGTTCAAGGCTCTTCCTCACTTTCTCCTCTTTAAGTTTCAAT
ATACCTGGTTTTAAGTGGAGGTCCTTGATCCACTTGGACTTGAGCTTTAT
ACAAGGAGATAAGAATGGGTTGATTTGCATTCTTCTACATGTTAATAAAA
GTTGAACCAGGACCATTTGTTCAAAATGCTGTCTTTTTTCCACTGGATGG
TTTTAGCTCCTTTGTCAAAGACATATGTCCATAAGAGTGTGGGTTCATTT
CTGGGTCTTCTATTCTAATGATCTACCTGCCTGTCACTGTACCAATACCA
TGAACTTTTTATCATGATTTCTCTGGAGTACAGCCTGAGTTTGGGGATGG
TGATTCCTCCAGAAGTTATTTTATTGTTGAGAATAGTTTTCACTTTCTTG
CGA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGTGGCATCATCTTGGTCCCTCTAGATCTCTT
CATGCTTTGCTCCTTGTAGAAACTGCATTGACTGTGAGGTCTAAGTTTCA
AACAGGATAAAAGAGGTCAGGTTTATACACTGGGTTTTTTGTACAAACTT
GGCTCGCTGTTAACTCTGCTAGCTTTTCTTAGTGGTTCAAACAAAATGTC
AAAGGCCTTCCCAGAGCCTGTGCATACTCAGGTAGATCGAGGCTCTTCTC
CCATCCCTCTGGAGTAACAGGGCTCTCATTTAATGCATTCCCACTTTCCT
GCAACAGCATGACGCCCTCTGTGAAGGTAGAAAAGATGCATCCGAAGATG
GATGGCACACTACTGAAATCCACAGTGGGGCCAGCCTGTCCTGCTACTAT
GAGCTCTGCAGTCAAGCCTGGCCTTAACTGTCCCTCAATACCAAAGCCAA
CCTTGCCTTCACCCGGACAGATTCTGAACGGCAAAGGGCTTCCTGCAATG
CCTACTCTGGAAAAGAAATCTGAAGACAGTTCTAATAACAGGAAATTTTT
AAATAAGAGATTATCAGGTAACATCACACTTCTTTCTCAAAGTTTCTGTG
TACAGAAGGTTGGGTGTATAGATTGGTTTTTTTTTATTATCCATTTTTTT
TACCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_l09.g1 MSMg01no082_l09.g1 CHROMAT_FILE:
MSMg01no082_l09.g1 PHD_FILE: MSMg01no082_l09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:15 2005
         (614 letters)



>mm_chr14_14921221_14922234
          Length = 1014

 Score = 1187 bits (614), Expect = 0.0
 Identities = 614/614 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtggcatcatcttggtccctctagatctcttcatgctttgctccttgtagaaactgcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtggcatcatcttggtccctctagatctcttcatgctttgctccttgtagaaactgcat 260

                                                                       
Query: 61  tgactgtgaggtctaagtttcaaacaggataaaagaggtcaggtttatacactgggtttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgactgtgaggtctaagtttcaaacaggataaaagaggtcaggtttatacactgggtttt 320

                                                                       
Query: 121 ttgtacaaacttggctcgctgttaactctgctagcttttcttagtggttcaaacaaaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtacaaacttggctcgctgttaactctgctagcttttcttagtggttcaaacaaaatg 380

                                                                       
Query: 181 tcaaaggccttcccagagcctgtgcatactcaggtagatcgaggctcttctcccatccct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaaaggccttcccagagcctgtgcatactcaggtagatcgaggctcttctcccatccct 440

                                                                       
Query: 241 ctggagtaacagggctctcatttaatgcattcccactttcctgcaacagcatgacgccct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctggagtaacagggctctcatttaatgcattcccactttcctgcaacagcatgacgccct 500

                                                                       
Query: 301 ctgtgaaggtagaaaagatgcatccgaagatggatggcacactactgaaatccacagtgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgtgaaggtagaaaagatgcatccgaagatggatggcacactactgaaatccacagtgg 560

                                                                       
Query: 361 ggccagcctgtcctgctactatgagctctgcagtcaagcctggccttaactgtccctcaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggccagcctgtcctgctactatgagctctgcagtcaagcctggccttaactgtccctcaa 620

                                                                       
Query: 421 taccaaagccaaccttgccttcacccggacagattctgaacggcaaagggcttcctgcaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taccaaagccaaccttgccttcacccggacagattctgaacggcaaagggcttcctgcaa 680

                                                                       
Query: 481 tgcctactctggaaaagaaatctgaagacagttctaataacaggaaatttttaaataaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgcctactctggaaaagaaatctgaagacagttctaataacaggaaatttttaaataaga 740

                                                                       
Query: 541 gattatcaggtaacatcacacttctttctcaaagtttctgtgtacagaaggttgggtgta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gattatcaggtaacatcacacttctttctcaaagtttctgtgtacagaaggttgggtgta 800

                         
Query: 601 tagattggtttttt 614
           ||||||||||||||
Sbjct: 801 tagattggtttttt 814


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space:   606416
Effective search space used:   606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)