BAC Information

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BAC

Clone NameMSMg01-083D20
Chromosome14 (Build37)
Map Location 20,700,601 - 20,700,857
singlet/doubletsinglet
Overlap geneGng2
Upstream geneUbe2e2, LOC627741, LOC100042299, LOC675069, LOC100042322, LOC632470, EG632477, EG632498, EG667341, LOC667344, LOC619996, EG434616, LOC675165, 1700110I01Rik, EG664814, LOC100039452, LOC100038983, LOC100039441, EG432825, LOC673583, EG664855, Nid2, 2700060E02Rik, LOC100039534
Downstream gene1810063B07Rik, Kcnk5, LOC100039106, Kcnk16, Nudt13, Ecd, AA536717, Dnajc9, Mrps16, Ttc18, Anxa7, Zmynd17, Ppp3cb, Usp54, Myoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g, Plau, EG620119
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083D20.T7 (MSMg01no083_d20.b1)MSMg01-083D20.TJ (MSMg01no083_d20.g1)
ACCAG303417AG303418
length730737
length of high quality
(start - end)
249 (73 - 321)282 (75 - 356)
definitionCHROMAT_FILE: MSMg01no083_d20.b1 PHD_FILE: MSMg01no083_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:55 2005CHROMAT_FILE: MSMg01no083_d20.g1 PHD_FILE: MSMg01no083_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATGCCCTCTTCTTGCCCCAAGGAATTTGTAAGAATACACCACTATTAG
TTGAATAAAATACCTGTTCTCTAAGGTTCCTTTGAGAACTTCTTTAGCGT
TGACCTCTTCCATGCGTCAGCACTGATACCACAATGATGAGTAAGACAGA
TAATGTTCCTGCCCCCCCCCACACACACACAGCATAGTGATGAAGGGTTA
GAAAATAGTAAGCAACCAATGAACAGGCTCATAAGGATAATCACAGTGGG
GAGGGATGTGGCTTCTGTGCTTTAGAAGAGTGCCCCACTTGGACAGATTA
GGATAAAGAAAGCTTGTTTGGAGGAAGATCAGTGAGTGCCCTATCAGGAG
TCAGATTTCTGGAGGAAAAACAGGACCGGCTGCAGAGTATGTGTGTAAGG
ATGCTTCACCTGAATCATATATACACTTCTGCAAGGCATAGAGGACTCTG
TTTGCTTTCATAATTAAAGGAGATGTGTCCGGATATGATATTGTAAAGGC
GTGCTCTTCTATTTATTTTTAACCCCATTTCCTAATATATCTATGCACTT
TTTATAAACAACTTCTTTTTTCATATATAACTATTTTATTTTTATATTAT
ATATTTTCTATTTTAACTCCATATTTCTTTTAATTGCACGGCCTTTTATT
TCTCATATCAATATCTTTATTATATCATTT
ATGAATGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACAGAGACTGTGGCAACATGCACAGA
GCCCGCACAGTCTGCGCCCGCTGGGGTAGACACAAGCCTCCATCCCAAAC
TTAGACGCTATCTCCAACTGATCACTTGTAAATGAAAACTTACTTTTCTC
AGCGTGTATACACTGGTGACAGGACTGCTCTCAGATATGGTTGATGGGAA
GGTTTTCATTGTAGGTATGAAGGAAAGTATAACCAGAGGCATCTTGAAGA
GTCTAGAACAGAGAGAGTAAATAGCTTTGCTGAACATGGCCAGCACACTG
GACCTGGCTGTGAGAGGAAAGAAACATGGGCCGAGAGAGAGGAAAACATA
TAGAGTGCGACTAAGGGAGACCAAGACAGAGGCGACCAACAGAGTACAGT
GATAAGGACATAGGAAGATGGTTGTGCTATGCTCAATAGTTGTAGAAGCT
TATAGTACAAGACTATTGATTTATTCTGTCAACAGCCTCTGATGCTTGTG
ATACCATATGTATTCTGAAGTTCACTCTATTGTTTTTTCGATGTAAATTA
TCTTATTATATTCTATTTTAGCCATGTAAATCCTCCTAATTTAAATGTAT
TGATTATTACTTTGATCTATATTACCCCATCCTCATATCACTGATTCGAA
CTCTCTTAATCTAATTTATATATACCTCTAAAATTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_d20.b1 MSMg01no083_d20.b1 CHROMAT_FILE:
MSMg01no083_d20.b1 PHD_FILE: MSMg01no083_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:55 2005
         (249 letters)



>mm_chr14_20700511_20701159
          Length = 649

 Score =  431 bits (223), Expect = e-125
 Identities = 245/257 (95%), Gaps = 9/257 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggaatttgtaagaatacaccactattagttgaataaaatacctgttctctaaggttcctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ggaatttgtaagaatacaccactattagttgaataaaatacctgttctctaaggttcctt 288

                                                                       
Query: 61  tgagaacttctttagcgttgacctcttccatgcgtcagcactgataccacaatgatgagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 tgagaacttctttagcgttgacctcttccatgcgtcagcactgataccacaatgatgagt 228

                                                                       
Query: 121 aagacagataatgttcc-t--------gcccccccccacacacacacagcatagtgatga 171
           |||||||||| |||||| |        ||||||||||||||||||||||||||||| |||
Sbjct: 227 aagacagatactgttccctccccccccgcccccccccacacacacacagcatagtgctga 168

                                                                       
Query: 172 agggttagaaaatagtaagcaaccaatgaacaggctcataaggataatcacagtggggag 231
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 167 agggttagaaaatagtaagcaaccaatgaacaggctcagaaggataatcacagtggggag 108

                            
Query: 232 ggatgtggcttctgtgc 248
           |||||||||||||||||
Sbjct: 107 ggatgtggcttctgtgc 91


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)