BAC Information

Click to search

BAC

Clone NameMSMg01-083G06
Chromosome14 (Build37)
Map Location 60,821,497 - 60,821,957
singlet/doubletsinglet
Overlap genenone
Upstream geneRcbtb1, EG628693, Phf11, EG236451, D14Ertd668e, EG628705, Setdb2, Cab39l, Cdadc1, Tmem46, Atp8a2, LOC668162, LOC628768
Downstream geneNupl1, Mtmr6, 2600011E07Rik, Ppia-ps14_696.1, EG628836, Spata13, C1qtnf9, Mipep, LOC100043586, Tnfrsf19, Sacs
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083G06.T7 (MSMg01no083_g06.b1)MSMg01-083G06.TJ (MSMg01no083_g06.g1)
ACCAG303525AG303526
length699841
length of high quality
(start - end)		464 (47 - 510)54 (88 - 141)
definitionCHROMAT_FILE: MSMg01no083_g06.b1 PHD_FILE: MSMg01no083_g06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:06 2005CHROMAT_FILE: MSMg01no083_g06.g1 PHD_FILE: MSMg01no083_g06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGATGTACCAGGATATGCCAGTGAGCACTCGCATGATAGGGATG
TTGGAACAGTCTTGATAGAAGATCAAAGCAACCACTAAATTCCTTTAAGC
CAAAGCTTCATCCAGAGCAAAGATCCAGTTTTCAATTAGATAAAGGCAGA
GATGGCTAGCAAGATGGTTTATTGGGTATAGGAACTTGTTGCCAAGCCTG
CGGACCCAAGTTCAATCCCTGGAGCTCACGCGGTAGATGTCAGAGCAGAC
TCCCACTTGTGCCACATGTGGTCTTTTCTTCTTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCTTCCTCCTCCTCCT
CCTCCCTCTTCCTCTTCCTCTTCTTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCATCCTCTTCTTCTTCCTCCCCTTCTTCTTCTTCTT
CTTCTTCTCCTTCTGCTACTTCATCTTCATCGTCAGCCCCTTCTTCTTCT
TCTTCTTCTTCATCTTCTTCTGTTTTTTTTTTCCTAAAACAGGTATTTTC
TTGGCCAGTTCTAGCTGTTTCTGTTTATCCGTTCTGTCTCCCAGTTCGG

CAATACAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTAAGTTAGACCAGTCTCTCAGTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGTAGTATAT
ATAGTAGTAGTAGTAGTAGTAGTATATAGAGAGNATATAAANAATATATA
AAAAAAAATAAAATAAAAAAAAAATAAAAAAAAAAATAAAAAAAAAAAAA
AAAAAATACAAAAATTAGATAAAAATAAAATATAATATAAAAAATAAATA
AAAAATAAATAAAGTATAAAAAATAATAAATAAACAAAAAAATACTATAT
AAAAAAATACACAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAACAATAT
ACACTCCCCCACAACACACACCAAAAACACCAACCCCCACCCCCACATAC
ACCACTACCTCCCCCCCCCCACCAACAACACCCAAACCCACCCCAATACA
CACCCCTCAACCACACACACCCACACACCAACCCACACCCTACACCAACC
CATCACACAAACCCACCCACCACCACACACATAACTACCCACACCAAACA
TACAAATACACAACACCAAAACAACAAACCATAACAAAAAACCCCCACCA
AATAAACCACCCACAACAACCCCACCACAACCCAAATACAACACACAAAC
ACACACCCACCACACCCCCCTCCAACCACAACAACACCACAACCACCCCC
CACACACACAAAAACCAAAAAACCAACCACACACCCTATCACCCACAACC
CCACACACCACCCACACAAACACCCTCACACAATACCAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_g06.b1 MSMg01no083_g06.b1 CHROMAT_FILE:
MSMg01no083_g06.b1 PHD_FILE: MSMg01no083_g06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:06 2005
         (464 letters)



>mm_chr14_60821293_60822156
          Length = 864

 Score =  688 bits (356), Expect = 0.0
 Identities = 428/462 (92%), Gaps = 22/462 (4%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagatgtaccagg-atatgccagtgagcactcgcatgatagggatgttggaacag 63
           |||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagatgtaa-aggcatatgccagtgagcactcgcatgatagggatgttggaacag 263

                                                                       
Query: 64  tcttgatagaagatcaaagcaaccactaaattcctttaagccaaagcttcatccagagca 123
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcttgatagaagatcaaaacaaccactaaattcctttaagccaaagcttcatccagagca 323

                                                                       
Query: 124 aagatccagttttcaattagataaaggcagagatggctagcaagatggtttattgggtat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 324 aagatccagttttcaattagataaaggcagagatggctagcaagatggtttcttgggtat 383

                                                                       
Query: 184 aggaacttgttgccaagcctgcggacccaagttcaatccctggagctcacgcggtagatg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aggaacttgttgccaagcctgcggacccaagttcaatccctggagctcacgcggtagatg 443

                                                                       
Query: 244 tcagagcagactcccacttgtgccacatgtggtctt-ttcttcttcttcttcttcttctt 302
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 444 tcagagcagactcccacttgtgccacatgtggtcttcttcttcttcttcttcttcttctt 503

                                                                       
Query: 303 cttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttctt 362
           |||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct: 504 cttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcctcctcct 563

                                                                       
Query: 363 cttc-------------ttcttcttcttcttcttcctcttcttc--ct-cctcctcctcc 406
           | ||             |||||| ||||| ||||||||||||||  || |||||||||||
Sbjct: 564 cctcctcctcctcctccttcttcctcttcctcttcctcttcttcttcttcctcctcctcc 623

                                                     
Query: 407 tccctcttcctcttcctcttc---ttcctcctcctcctcctc 445
           ||| |||||||||||||||||   |||||| ||||| |||||
Sbjct: 624 tccttcttcctcttcctcttcctcttcctcttcctcttcctc 665


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 239
Number of extensions: 77
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |