BAC Information

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BAC

Clone NameMSMg01-083H22
Chromosome14 (Build37)
Map Location 15,574,233 - 15,574,458
singlet/doubletsinglet
Overlap geneSlc4a7
Upstream geneEG382844, LOC100042045, Gm281, Thoc7, Atxn7, Psmd6, Olfr720, LOC667125, LOC100042543, Olfr31, Il3ra, LOC627139, Olfr721-ps1, LOC667152, LOC100042147
Downstream geneNek10, Lrrc3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083H22.T7 (MSMg01no083_h22.b1)MSMg01-083H22.TJ (MSMg01no083_h22.g1)
ACCAG303599AG303600
length739722
length of high quality
(start - end)
54 (170 - 223)226 (179 - 404)
definitionCHROMAT_FILE: MSMg01no083_h22.b1 PHD_FILE: MSMg01no083_h22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:14 2005CHROMAT_FILE: MSMg01no083_h22.g1 PHD_FILE: MSMg01no083_h22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAT
TCTTTGTTTATCCCTGCACCCCATTTTTAATACGTTTATTTGATTTTCTG
GAGTCAGCTTCTTGAGTTCTTTGGATATATTGCACACTAGTCCCCTATCT
AATTTAGTATTTGTAAAGATCCTTTCCCAACCTGTTGGAGGCCTTTTTGT
CTTATTGACAGTGTCTCTTTTGCCTTACAGAAGCTTTGCCATTTTATTAG
TTCCCATTTCTCAATTCTTTGATCTTAAAGCACCTGCCATTGGTGCTCAG
CTTAATAATTTTTCACCTGTGCTCCATATCGACGAAGCTTTTCCCTACTT
TCTCCTCTATTAACTTCACCGTCCGCGGGTTTATGTGTAAAGCTTCGATC
TCCTTTGATTTGATCTTTGTAATAAATATCTGAATGTATCAGTATTGAAT
TCACTTATATGTAATCTTCCAGGTTTCTCTATGATTATTTGTGGAATTTG
TTTACGTTTTACCTATGAAAGTTCAGAGATACTTCTATAAACTAAGATGA
TGCTTATCGTATAAATCGCTGCCTAGGTCGTCCTGTTCTCACTATAGACG
TGAAGGCATACATCGTTTCACGCTGAGCTCGCTGGTACGCCTGTAGTTGG
AATGCTAAGGGTGAGGGTGAGCTATATTGTCTAAATCTACGATGGCTGAC
ATAGATAAGTACGTACCGTAGTTGGTTGGATCGGGTACG
NCGATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTAGTTCCAGGCGAGGCTGGTCTATAC
AGCAAATTTCAAGCCAGGCAGGGTTACACAGTGAGGCCTGTCTTTTTTAA
AGAAAGTGAGAGATAAAGAGAATTATGACATCAAGTTTTAAATCAATATT
CCAAAGCACGCCGTCGCGCTTCTACCACGGTACACACAATCACGGAATCA
GCTAACTAAAAACAAAGCATTGGACAAGAGCAATGAGAAATAAGTCCAAT
ATTTCATAAGCATAGGAATATTTATACTTAAAATACCTGGTACTATTAGT
AAGTGTGGCTTAAAAGAGAATCACTCTCCTGTAGCTTTCTAAAACCAAAT
AGTAGTTGCATAAGAAATAGAACAATCTTTTGTAATCTGCATAATCAAAG
CTACATGGTCAGAATAGTCAAATATAGCAAAGATAAAGAGTGTGAGTAAA
CCCATTATTTGTTTGGTAATTAAATAAGTTATTAGAGGCAACTGTTTAAC
ACATTAACAACTAATATTTAGGTTTTAAGAGCTACATGCAGAAAAGTTGC
TTACATTATAATCATAATGCTATGAAATTAATTTAACATTGTATTCAAAA
ATTATCTTTGTGTTATGATGAAAAGAAATTATACTACCGAGAGAATATTG
AGAAAAACTGCATAAAGGACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_h22.g1 MSMg01no083_h22.g1 CHROMAT_FILE:
MSMg01no083_h22.g1 PHD_FILE: MSMg01no083_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:14 2005
         (226 letters)



>mm_chr14_15574033_15574658
          Length = 626

 Score =  398 bits (206), Expect = e-115
 Identities = 221/226 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   catcaagttttaaatcaatattccaaagcacgccgtcgcgcttctaccacggtacacaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 catcaagttttaaatcaatattccaaagcacgccgtcgcgcttctaccacggtacacaca 367

                                                                       
Query: 61  atcacggaatcagctaactaaaaacaaagcattggacaagagcaatgagaaataagtcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 atcacggaatcagctaactaaaaacaaagcattggacaagagcaatgagaaataagtcca 307

                                                                       
Query: 121 atatttcataagcataggaatatttatacttaaaatacctggtactattagtaagtgtgg 180
           |||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 306 atatttcaaaagcataggaatatttatacttaaaatatctggtactactagtaagtgtgg 247

                                                         
Query: 181 cttaaaagagaatcactctcctgtagctttctaaaaccaaatagta 226
           |||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 246 cttaaaagagaaacactctcctgtagctttctaaaaacaaatagta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 626
Length adjustment: 9
Effective length of query: 217
Effective length of database: 617
Effective search space:   133889
Effective search space used:   133889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)