BAC Information

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BAC

Clone NameMSMg01-083J20
Chromosome14 (Build37)
Map Location 107,997,488 - 107,997,855
singlet/doubletsinglet
Overlap geneLOC668752
Upstream geneLOC668748
Downstream geneEG668754, LOC668757
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083J20.T7 (MSMg01no083_j20.b1)MSMg01-083J20.TJ (MSMg01no083_j20.g1)
ACCAG303685AG303686
length718715
length of high quality
(start - end)
236 (76 - 311)399 (72 - 470)
definitionCHROMAT_FILE: MSMg01no083_j20.b1 PHD_FILE: MSMg01no083_j20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:23 2005CHROMAT_FILE: MSMg01no083_j20.g1 PHD_FILE: MSMg01no083_j20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXCTATTTTCCAAAAGGGGCGGAAT
TCTCCACTGTATCGAGATAAAAGGCCTCATATCAGCTGGTGTATACTGTC
TGTTTGTTTGGTGGTGCAGTGCTTGAAAGATCTCAGGGGTCCAGATTAAT
TAAGACTGCTGGTCCTTCTACAGGATCACCCTTCTCTTTCTCCTTCTCTT
TCAACCTTCCCTAATTCAACAACAGGGGTCAGCTGCTTCTGTACATTGGT
TGTTTGCAAATATCTGCATCTGACTCTTTCAGCTGCTTGTTGCATCTTTC
AGAGGGCAGTCATGATTTTCCTCAGTTTTGTGAGCGCTCAGTAATAGTGT
CAGACTTTGTTTATCTCCTGCTGACCTGAATCCCAATTTGGGCCTGTCAC
TGAACCTTCTTTTCCACAGGCTCCTCTCCATTTCTTTCCCTGTAGTTCTT
TCAGACAGAATCAATTATGGGACAGAGATGTGACTGTGGGATGACTACCC
CATCTCTCACTTGATGTCCTGTCTTGCCGTTGTAGGATGTCTCTATAATG
ATAAAGTTTTAAAAAATTCTTTTTGTCTGACTGTTTGTTAATGACCTTAC
ATATGTATTCTCTTTCTTGTGGGTCTCAAAATCTTATCAAACAATTTCAC
GTATTACTTTTTATTTTTTTAAATAAATCACTAAATTGAATCATAAATTT
TATAACTAATAATGTATG
AATGATGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTCTTTCTCCATGATCTTCTGTACCCTC
TGTTTGCTATGCTGGACTCATGTGAGTTTGTGAATTGGACTTATTCTATC
TCTGACTCACTGTGTCAAATCTTTCTCTGATCTGTCACTTTGTCTGCCCC
TCAACTAGATGTTATTGTTTGGGATTAAAAGTGTATACTGAAGGTTTTTC
TGCAGGTGAACCCTTGCCAGAACAGCCGTGTTACTGGATTAAAATTCCTC
TAGACTCATGAATATTAATATGTATTCAAATACCTCTTTAAAATTACTTT
GTTAATTATTTTCCAATATTTCTTAATTGTCCTGTTAGATTTTTTCTTTA
TCTATTTAAAATATTGTATTCTGTAGTACCTTCCTTGGATAATTCCCTCC
TACCTCATGGTACCTTACCATCTAAGCAATCTCATTGAGTATTCCTAAGA
AGTCATTTATATAATATGTCATATGGTGGTTTCTCTTATCTGAAAAAAGT
TCAACATTTGTCCTTTTGGTTCTTTGTTACATTTTGTTTATTTTTGTAAA
GTTGTTTTTTTTAAAATCTTTATTATATTTTATCCATTTATAATATTTTA
CTTCAAAACCTTTAACTTATTTTTTTCTATTTCTATTCTTTTCTTCTTTC
ACAGATATTTAATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_j20.g1 MSMg01no083_j20.g1 CHROMAT_FILE:
MSMg01no083_j20.g1 PHD_FILE: MSMg01no083_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:23 2005
         (399 letters)



>mm_chr14_107997057_107997855
          Length = 799

 Score =  696 bits (360), Expect = 0.0
 Identities = 366/368 (99%)
 Strand = Plus / Minus

                                                                       
Query: 32  tttgctatgctggactcatgtgagtttgtgaattggacttattctatctctgactcactg 91
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 tttgctatgctggactcatgtgagtttgtgaattggacttattctatctctgactcactg 740

                                                                       
Query: 92  tgtcaaatctttctctgatctgtcactttgtctgcccctcaactagatgttattgtttgg 151
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tgtcaaatctttctctgatctgtcactttgtctgcccctcaactagatgttattgtttgg 680

                                                                       
Query: 152 gattaaaagtgtatactgaaggtttttctgcaggtgaacccttgccagaacagccgtgtt 211
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 679 gattaaaagtgtatactgaaggtttttctgcaggtgaacccttgccagaacagccatgtt 620

                                                                       
Query: 212 actggattaaaattcctctagactcatgaatattaatatgtattcaaatacctctttaaa 271
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 actggattaaaattcctctagactcatgaatattaatatgtattcaaatacctctttaaa 560

                                                                       
Query: 272 attactttgttaattattttccaatatttcttaattgtcctgttagattttttctttatc 331
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 attactttgttaattattttccaatatttcttaattgtcctgttagattttttctttatc 500

                                                                       
Query: 332 tatttaaaatattgtattctgtagtaccttccttggataattccctcctacctcatggta 391
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 499 tatttaaaatattgtattctgtagtaccttccttggaaaattccctcctacctcatggta 440

                   
Query: 392 ccttacca 399
           ||||||||
Sbjct: 439 ccttacca 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space:   308100
Effective search space used:   308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)