BAC Information

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BAC

Clone NameMSMg01-083K06
Chromosome14 (Build37)
Map Location 88,521,763 - 88,609,927
singlet/doubletdoublet
Overlap geneLOC100043780
Upstream geneDiap3, EG665324, Tdrd3, LOC100043317
Downstream geneLOC668624, LOC668625, Pcdh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083K06.T7 (MSMg01no083_k06.b1)MSMg01-083K06.TJ (MSMg01no083_k06.g1)
ACCAG303704AG303705
length698712
length of high quality
(start - end)		556 (46 - 601)241 (76 - 316)
definitionCHROMAT_FILE: MSMg01no083_k06.b1 PHD_FILE: MSMg01no083_k06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:25 2005CHROMAT_FILE: MSMg01no083_k06.g1 PHD_FILE: MSMg01no083_k06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,609,377 - 88,609,927)(88,521,763 - 88,522,003)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAATATAGTCATAAAATCATTTAACTATTAAAAAGTCACAGAAACA
CACATATTTATAAAGTAATATAAACTAAAAAGGTTAAAGGAAGTCTGAAA
TTATAATTACCTTTCACAAGGTCTAGAAAAGAGGAAAACCAATTCAGGTC
ATGGTTAAGTAGAATTAACTGGGTTTTCTTCTCTAATTCTTTTATTATTA
TGGTTAATGCTATCATCATTATTTTATTTCTGCTGATGTTTTACCAGTGT
TTTGTGCAAAACATACAATGAATATTAGAAGCTGGTTTAATTTACTGACA
ATCATCATTTAATGGTTAGCAAATATAGACATACATAAACTGGACATGTT
TGTTCCCTTAGGCATAAAACCTTGCTCTAATTATATATACAACCTAAATA
TGTGTATAAGGCCCTTTAAGGCATACTTAAGCAATTGGTGACACATTTTA
ATCACTAGATGGAAACCAGAAAGAAAACTTTATAGACAAAACCAGCAATG
CTTCAGTCACAAACAAAATCTATAAAAAGTGGGTGGGGAGGAGGGAAAGG
TTTCCCTCTTCCTCCTCCTTCTCTTTTTTCTCCTCTCCCTGTTTTTTTTC
CCTCCTTTTTTTTTTTTTTTTTTCTCCTCTTCCCTTTCCCTCTTTGTT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTATCTTTAGGCTCTGAGGTCTGG
AGGTGGGGAATTGGTAATCAGAGTTCAGAAGATGATGTCTTTGAAAATGT
CTCAGGCTTTTCTTGCTCTCGTGTTGCTGTGGAAGTATGGGAGGATTTTT
CATCCTGTTTTCCTATGTCAGATGAAGAGCCATTCATAGTAATTTAGAAA
CTTATTTTTAGCAGCTGAAAAAAAAAATCAGGGGACCCTGTCCAATGCTA
TATTCACATGAGGCACCTATAGCAATATAAATTCACCTTCCATTTCCCCC
ATTGCTTGGAGTTGATGAATATTTGTCATTTATGTTTACCTATGATCAAT
ATATTTATATGACCCTGTATGGTACTATATCTTATCATCCCACGATGCCC
CGCCTCGTATTTAACTTATTTGTGTTATCTTATATTATAACATCTTTTTT
CTTATTTTATTTCTTTGTTTATTTTCAGTATCGTTCTCTTATATCGCTTC
GCCCTCTTTTTGACATTAGTTTTTTTCCTTTTTCTATGTTCTACTATCCT
ATTTCCTCTTCCCCCTCTTTTTCTTGTTCCCCCTGCTCCCTCCTCTATTG
TCACTGAGTATCTTGATTTTATGGCCTCATTCCTCATCTCTACTCTTTCC
TTCTTATTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_k06.b1 MSMg01no083_k06.b1 CHROMAT_FILE:
MSMg01no083_k06.b1 PHD_FILE: MSMg01no083_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:25 2005
         (556 letters)



>mm_chr14_88609173_88610128
          Length = 956

 Score = 1065 bits (551), Expect = 0.0
 Identities = 551/551 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaatatagtcataaaatcatttaactattaaaaagtcacagaaacacacatattt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 gaattcaatatagtcataaaatcatttaactattaaaaagtcacagaaacacacatattt 696

                                                                       
Query: 65  ataaagtaatataaactaaaaaggttaaaggaagtctgaaattataattacctttcacaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ataaagtaatataaactaaaaaggttaaaggaagtctgaaattataattacctttcacaa 636

                                                                       
Query: 125 ggtctagaaaagaggaaaaccaattcaggtcatggttaagtagaattaactgggttttct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 ggtctagaaaagaggaaaaccaattcaggtcatggttaagtagaattaactgggttttct 576

                                                                       
Query: 185 tctctaattcttttattattatggttaatgctatcatcattattttatttctgctgatgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tctctaattcttttattattatggttaatgctatcatcattattttatttctgctgatgt 516

                                                                       
Query: 245 tttaccagtgttttgtgcaaaacatacaatgaatattagaagctggtttaatttactgac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tttaccagtgttttgtgcaaaacatacaatgaatattagaagctggtttaatttactgac 456

                                                                       
Query: 305 aatcatcatttaatggttagcaaatatagacatacataaactggacatgtttgttccctt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 aatcatcatttaatggttagcaaatatagacatacataaactggacatgtttgttccctt 396

                                                                       
Query: 365 aggcataaaaccttgctctaattatatatacaacctaaatatgtgtataaggccctttaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 aggcataaaaccttgctctaattatatatacaacctaaatatgtgtataaggccctttaa 336

                                                                       
Query: 425 ggcatacttaagcaattggtgacacattttaatcactagatggaaaccagaaagaaaact 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ggcatacttaagcaattggtgacacattttaatcactagatggaaaccagaaagaaaact 276

                                                                       
Query: 485 ttatagacaaaaccagcaatgcttcagtcacaaacaaaatctataaaaagtgggtgggga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ttatagacaaaaccagcaatgcttcagtcacaaacaaaatctataaaaagtgggtgggga 216

                      
Query: 545 ggagggaaagg 555
           |||||||||||
Sbjct: 215 ggagggaaagg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no083_k06.g1 MSMg01no083_k06.g1 CHROMAT_FILE:
MSMg01no083_k06.g1 PHD_FILE: MSMg01no083_k06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:25 2005
         (241 letters)



>mm_chr14_88521563_88522203
          Length = 641

 Score =  458 bits (237), Expect = e-133
 Identities = 240/241 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctatctttaggctctgaggtctggaggtggggaattggtaatcagagttcagaagatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctatctttaggctctgaggtctggaggtggggaattggtaatcagagttcagaagatga 260

                                                                       
Query: 61  tgtctttgaaaatgtctcaggcttttcttgctctcgtgttgctgtggaagtatgggagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtctttgaaaatgtctcaggcttttcttgctctcgtgttgctgtggaagtatgggagga 320

                                                                       
Query: 121 tttttcatcctgttttcctatgtcagatgaagagccattcatagtaatttagaaacttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttttcatcctgttttcctatgtcagatgaagagccattcatagtaatttagaaacttat 380

                                                                       
Query: 181 ttttagcagctgaaaaaaaaaatcaggggaccctgtccaatgctatattcacatgaggca 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttagcagttgaaaaaaaaaatcaggggaccctgtccaatgctatattcacatgaggca 440

            
Query: 241 c 241
           |
Sbjct: 441 c 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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