Query= MSMg01no084_h22.b1 MSMg01no084_h22.b1 CHROMAT_FILE:
MSMg01no084_h22.b1 PHD_FILE: MSMg01no084_h22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:32 2005
(535 letters)
>mm_chr14_123125575_123126509
Length = 935
Score = 953 bits (493), Expect = 0.0
Identities = 527/541 (97%), Gaps = 7/541 (1%)
Strand = Plus / Minus
Query: 2 gaattcctctcttgcttaccggatgctttcttctac-tagcatgttctcttgtac-catg 59
|||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||
Sbjct: 864 gaattcctctcttgcttattggatgctttcttctacatagcatgttctcttgtacacatg 805
Query: 60 ctaaaattagctcctcctgctgataggcattgagttgtctccgttttagatttagggtgg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ctaaaattagctcctcctgctgataggcattgagttgtctccgttttagatttagggtgg 745
Query: 120 atgtgaggttcccgtcattactataaatgccaaggagctccaggctgccagatgtggtgc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 atgtgaggttcccgtcattactataaatgccaaggagctccaggctgccagatgtggtgc 685
Query: 180 tgagaatgaaacttaggtcctcaagaagaccatcaagtgctcttaactgctgagccacct 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgagaatgaaacttaggtcctcaagaagaccatcaagtgctcttaactgctgagccacct 625
Query: 240 ctccagccacttaatttcagtcttatgaagacaatgcccaaagtatttctctaacatttc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctccagccacttaatttcagtcttatgaagacaatgcccaaagtatttctctaacatttc 565
Query: 300 ttgccttcttcacccctttccttttgtgacacctaacacgtgtgtgttacctttctttat 359
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 564 ttgccttcttcacccctttccttttgagacacctaacacgtgtgtgttacctttctttat 505
Query: 360 aacactaaactgtcttcaactttttaaaacatatttgctgaaataaaatctacatttaaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aacactaaactgtcttcaactttttaaaacatatttgctgaaataaaatctacatttaaa 445
Query: 420 acaaaacaaaaca-----taacaaaaccccaaatcctaggcctggacagctcagtggtca 474
||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 444 acaaaacaaaacaaaacataacaaaacccaaaatcctgggcctggacagctcagtggtca 385
Query: 475 aagtgcctgctgtgtgagcaaaaggattgaagcttggagctccagaactaacgctagcca 534
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 384 aagtgcctgctgtgtgagcaaaaggattgaagcttggagctccagaattaacactagcca 325
Query: 535 a 535
|
Sbjct: 324 a 324
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space: 485625
Effective search space used: 485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no084_h22.g1 MSMg01no084_h22.g1 CHROMAT_FILE:
MSMg01no084_h22.g1 PHD_FILE: MSMg01no084_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:32 2005
(532 letters)
>mm_chr14_123007195_123008126
Length = 932
Score = 1006 bits (520), Expect = 0.0
Identities = 529/532 (99%)
Strand = Plus / Plus
Query: 1 cagataggaacatgcctacaattcctccctggtataaaactgaatagttcatttgctttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagataggaacatgcctacaattcctccctggtataaaactgaatagttcatttgctttt 260
Query: 61 cagttaaaacacaacaacaacatcaacaacaaaatagaaacaaataccatcttacagtgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagttaaaacacaacaacaacatcaacaacaaaatagaaacaaataccatcttacagtgt 320
Query: 121 ggtggtttaggaagcagaggctggaaggttgtacacaggtctttgaggggtagcctggtc 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 ggtggtttaggaagcagaggctggaaggttgtacacaggtctttgaagggtagcctggtc 380
Query: 181 tatattgctctagatgatccagggatacaaaaacagaaacaaaaacaagctcaaaaccca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatattgctctagatgatccagggatacaaaaacagaaacaaaaacaagctcaaaaccca 440
Query: 241 aaaccaaaccagaccatctccctaaagactgagtaatgctgcagagaagacgagaagtga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaccaaaccagaccatctccctaaagactgagtaatgctgcagagaagacgagaagtga 500
Query: 301 ccttgctggaaacaggaactgttttcacgtgccttctctaatctctttgcaggttgcatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccttgctggaaacaggaactgttttcacgtgccttctctaatctctttgcaggttgcatt 560
Query: 361 taccacactcaagcacaagctcaaatcaagtgctgtgactggagcttgatggcatacagc 420
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 561 taccacactcaagcacaagctcaaatcaagtgctgtgactggaacttgatggcatacagc 620
Query: 421 tcttacatcagtatacagcatgatagagcttgctgcctgataataaagtggagatggtaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcttacatcagtatacagcatgatagagcttgctgcctgataataaagtggagatggtaa 680
Query: 481 aagggagaggaggacaggttctccactgttcattgttcttacatggtggaca 532
|||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 681 aagggagaggaggacaggttctccactgttcattgttcttacatagtggaca 732
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space: 481284
Effective search space used: 481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
