BAC Information

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BAC

Clone NameMSMg01-084N22
Chromosome14 (Build37)
Map Location 71,896,133 - 71,896,634
singlet/doubletsinglet
Overlap genenone
Upstream geneBmp1, Sftpc, Lgi3, Reep4, Hr, Nudt18, Rai16, Epb4.9, Fgf17, Npm2, Xpo7, LOC668443, Dok2, Gfra2, LOC100043132
Downstream geneLOC100043136, LOC668477, LOC668482
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084N22.T7 (MSMg01no084_n22.b1)MSMg01-084N22.TJ (MSMg01no084_n22.g1)
ACCAG304606AG304607
length694711
length of high quality
(start - end)
543 (11 - 553)498 (56 - 553)
definitionCHROMAT_FILE: MSMg01no084_n22.b1 PHD_FILE: MSMg01no084_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:01 2005CHROMAT_FILE: MSMg01no084_n22.g1 PHD_FILE: MSMg01no084_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCAAATCCGCGGAATTCTCAGGCTGATTAACCAAACAATGAGCATTTGAA
GACAAAGTCTAACTAAAGAAAGCAAATTCACCCAAGAGGAGTAGATGGCA
GGAAATTATCAAACTCAGGGCTGAAATCAACCAAGTGGAAACAAAAAGAA
CTATTTAAATAATCAACCAAACCAGCAGCTGGTTCATTGAGAAAATCAAC
AAGATAGATAAACCCTTAGCCAGACTAAATAGAGGGCACAGGGACAGTGT
TCTAATTAAAAAATCAGAAATGAAAAAGGAGACATAACAACAGAACCTGA
GGAAATCCAAAACATCATCAGATCCTACTACAAAAGGCTATACTCAACAA
AACTGGATAACCTGGATGAAATGGACAACTTCCTAGACAGATACAAGGTA
CTAAAGTTAAATCAGGATCATATTAATCATCTAATCAGTCCCATTTCCCC
TAAAGAAATAGAAGCAGTCATCAATAATCTCCCAACCAAAAAAAAAAAAA
AAAAAAGCCCAGGATCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTC
AAAGAAGACCTAATTCCAACTCTCCTCAAACTATTCCACAAAATAGAAAC
AGAAGGTACTCTACCTAATTCATTCTATGAAGCCACAATTACTCTGATAC
CTAAACCCACCTAAGACCCATTGAAGAAGGAAAATTCAGACCAT
TGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTGTTCCATATTAGGTGGAATTTTCAGAGATTCAGTTATCATTGCA
TTATCCATCATCCTGGAAACACCACAGAAGCCCTGAAAACTACACTAATT
GCTTTAATTATGTTATGTGTCTGTAAATCTGTGGTGAGCTGACTGGTTTG
AGCAAGATCAAGTGCTTCATCAGCTCTGGGCATAGGTTCAACCTCACCCA
CTAACTCATAAACAAAGAATGGGAAGGATGGCCCTTGATGGAAAAACTCA
GAATAAAAGTATCCAGAGGGAAGAAATAGATGCAGAGTAGAGAATTCTCT
ACTCCCAGAAGTAAACTATATTCCTATTTCTTTGCTCAATTTTACTTTCA
AGCCACAATAAGTAACATTTCTCCTTCAATTACCAAGAAGGCGGTATCTT
TTCTGATTTAGTCATCAGCCTGAAGCTGGGTTTCAGGTACTTGCTGTTGC
ATCCTTTTTTTTTTTCTAGAAAATCTACACAAAGTATACTTCCATGTTAC
TTAACAATGGGATAAGGACTTCTGAGTCATTCACATAACATAACACTTCA
TTTTCTTTCACCTCAAAGACTTTTAATCTCCCAGTGTTTGTCTCAATCCC
AAGACCATGTGTTCTGCTAAGTTCCCTCTTTCATTTTTTCCTCCTGTCCG
GACTTTCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_n22.g1 MSMg01no084_n22.g1 CHROMAT_FILE:
MSMg01no084_n22.g1 PHD_FILE: MSMg01no084_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:35:01 2005
         (498 letters)



>mm_chr14_71895933_71896834
          Length = 902

 Score =  920 bits (476), Expect = 0.0
 Identities = 494/502 (98%), Gaps = 4/502 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttccatattaggtggaattttcagagattcagttatcattgcattatccatcatcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttccatattaggtggaattttcagagattcagttatcattgcattatccatcatcctg 260

                                                                       
Query: 61  gaaacaccacagaagccctgaaaactacactaattgctttaattatgttatgtgtctgta 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaacaccacagaagccctgaaagctacactaattgctttaattatgttatgtgtctgta 320

                                                                       
Query: 121 aatctgtggtgagctgactggtttgagcaagatcaagtgcttcatcagctctgggcatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatctgtggtgagctgactggtttgagcaagatcaagtgcttcatcagctctgggcatag 380

                                                                       
Query: 181 gttcaacctcacccactaactcataaacaaagaatgggaaggatggcccttgatggaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttcaacctcacccactaactcataaacaaagaatgggaaggatggcccttgatggaaaa 440

                                                                       
Query: 241 actcagaataaaagtatccagagggaagaaatagatgcagagtagagaattctctactcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actcagaataaaagtatccagagggaagaaatagatgcagagtagagaattctctactcc 500

                                                                       
Query: 301 cagaagtaaactatattcctatttctttgctcaattttactttcaagccacaataagtaa 360
           |||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||
Sbjct: 501 cagaagtaaactatattcctatttctttgctcaattttactttcaagttagaataagtaa 560

                                                                       
Query: 361 catttctccttcaattaccaagaaggcggtatcttttctgatttagtcatcagcctgaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catttctccttcaattaccaagaaggcggtatcttttctgatttagtcatcagcctgaag 620

                                                                       
Query: 421 ctgggtttcaggtacttgctgttgcatccttttttttttt----ctagaaaatctacaca 476
           ||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||
Sbjct: 621 ctgggtttcaggtacttgctgttgcatcctttttttttttttttctagaaaatctacaca 680

                                 
Query: 477 aagtatacttccatgttactta 498
           ||||||||||||||||||||||
Sbjct: 681 aagtatacttccatgttactta 702


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 902
Length adjustment: 10
Effective length of query: 488
Effective length of database: 892
Effective search space:   435296
Effective search space used:   435296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)