BAC Information

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BAC

Clone NameMSMg01-086D06
Chromosome14 (Build37)
Map Location 124,378,065 - 124,378,489
singlet/doubletsinglet
Overlap geneFgf14
Upstream geneTmtc4, Vgcnl1, Itgbl1, LOC668700
Downstream geneGA_x5J8B7W4W3R-189177-188236
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086D06.T7 (MSMg01no086_d06.b1)MSMg01-086D06.TJ (MSMg01no086_d06.g1)
ACCAG305580AG305581
length680682
length of high quality
(start - end)
399 (46 - 444)426 (56 - 481)
definitionCHROMAT_FILE: MSMg01no086_d06.b1 PHD_FILE: MSMg01no086_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:51 2005CHROMAT_FILE: MSMg01no086_d06.g1 PHD_FILE: MSMg01no086_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCTATATCGCAGAGGATCCGCGGAATTCATATATGATACCACCATGTA
ATACCTCACTAATAGATTTAACTATTATGTTATATATTGCAATTAAAACA
CCAAAGTATTAGAAAATATACTAATTTATTTTTTTAAAAAGCAACGCAAA
AGGCTGAATAATAGATGGCAGTCTACTAGCATTGAGTCAATTCTTTAGGA
CTTTTGAATGACCCTGAGAATTTGTGGGGAATTGCAGGCTGGTATCCAGT
TGAGCTGAGGTCTGAACCCCGATGGTCATAATTCACCTCATGACACAGTA
GGCCTTCCCTCATGCTCCTGGAACTCCGGCCCCTGCCTAAGGTACCACCT
CCCACAGCCCCAACAAGAGAAGCATGGTCAGTAGTCATGTAAGCAATGGC
CCAATCTTCTGACCTTCAGGCTAAACTCCTCCCCAGTTACCTAGCAACAG
CGAATACCATAAAAAGGGGTGCTCAGCCCCCACCTCCATCTCTTACTCCT
TTGTTCCTCTACCTCTCACTTCTCTCACTTCTCTCTCCTCTTCCCTTTTT
CTTTGCCCTCTTCTTTCAGAACCTCTTCCCCTATTCCCTCTCACACATCC
TGGTGACTTTTCCAAACCACCTCGGCCGCCCTTTCTAAGCACTCCCCAGG
TTAGGCCCGATTCCTTGCCCGGGCTGCCCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXAATTCAAAATGAAATTAAAGCAATAAAACAAAATTAAATAAATCA
AATGCCCAAACCCCAATTGCTGGAGTATGTTGGGTTGTCTTTAGTTTTAT
TTAGGGTACTCAACAAACTGTATTCTGAAATCTTGACAAATCAGCTCTAA
CCAGCCTGTTGGGCCTAACATAGCTGAGTTAGAGGTATATACTGCTGACA
TCCAGGATACCAGGCCCCATGCTGAGCTAAAAACAAAACAAAACAAAACA
AAACCAATCTAAACCCAAAATAAAAGAGCAAACAAAACCCCTAATACATC
CAGTTTTAAAGCTTGTCATTAAATACCAAAAATATTAAAGTCTAATTTAT
ACTAACGTGTGCATTGCTGCTGCAGGAAAGAACACAACAGCCGCCTTGCC
CATGCTTTGCTGAGGATGAGGATAACTGGAGTGCAGCCCATATCAGGTGT
GGCACTGAGTTATCTTCATTAAAAATACGAAGGAGTTGGCCGGAAATGAA
CTTAGGTAGCATATTTCCTATAGCTCGTATGACTTGGGTTCTTATTCTTT
TTTCCCAACATGGAGGATTATTTGATGGACAAATATTGAACCTTAACCCA
GCCCTACAGGCCTTAACGATTCCCTTGGACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_d06.g1 MSMg01no086_d06.g1 CHROMAT_FILE:
MSMg01no086_d06.g1 PHD_FILE: MSMg01no086_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:37:51 2005
         (426 letters)



>mm_chr14_124377865_124378690
          Length = 826

 Score =  814 bits (421), Expect = 0.0
 Identities = 424/425 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattcaaaatgaaattaaagcaataaaacaaaattaaataaatcaaatgcccaaacccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattcaaaatgaaattaaagcaataaaacaaaattaaataaatcaaatgcccaaacccca 260

                                                                       
Query: 61  attgctggagtatgttgggttgtctttagttttatttagggtactcaacaaactgtattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attgctggagtatgttgggttgtctttagttttatttagggtactcaacaaactgtattc 320

                                                                       
Query: 121 tgaaatcttgacaaatcagctctaaccagcctgttgggcctaacatagctgagttagagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaaatcttgacaaatcagctctaaccagcctgttgggcctaacatagctgagttagagg 380

                                                                       
Query: 181 tatatactgctgacatccaggataccaggccccatgctgagctaaaaacaaaacaaaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatatactgctgacatccaggataccaggccccatgctgagctaaaaacaaaacaaaaca 440

                                                                       
Query: 241 aaacaaaaccaatctaaacccaaaataaaagagcaaacaaaacccctaatacatccagtt 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaacaaaaccaatcaaaacccaaaataaaagagcaaacaaaacccctaatacatccagtt 500

                                                                       
Query: 301 ttaaagcttgtcattaaataccaaaaatattaaagtctaatttatactaacgtgtgcatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaaagcttgtcattaaataccaaaaatattaaagtctaatttatactaacgtgtgcatt 560

                                                                       
Query: 361 gctgctgcaggaaagaacacaacagccgccttgcccatgctttgctgaggatgaggataa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctgctgcaggaaagaacacaacagccgccttgcccatgctttgctgaggatgaggataa 620

                
Query: 421 ctgga 425
           |||||
Sbjct: 621 ctgga 625


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space:   340689
Effective search space used:   340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)