BAC Information

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BAC

Clone NameMSMg01-086F05
Chromosome14 (Build37)
Map Location 107,960,653 - 107,960,891
singlet/doubletsinglet
Overlap geneLOC668752
Upstream geneLOC668748
Downstream geneEG668754, LOC668757
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086F05.T7 (MSMg01no086_f05.b1)MSMg01-086F05.TJ (MSMg01no086_f05.g1)
ACCAG305669AG305670
length779764
length of high quality
(start - end)
239 (136 - 374)292 (131 - 422)
definitionCHROMAT_FILE: MSMg01no086_f05.b1 PHD_FILE: MSMg01no086_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:01 2005CHROMAT_FILE: MSMg01no086_f05.g1 PHD_FILE: MSMg01no086_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNTTTCCTTTTNNCCCNNCTCCTTCCCCTCCCCCTTCCNCCCTTAA
TAAAANNNNGACTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCA
GAGGATCCGCGGAATTCCTGCCTGTTTCCAAGCTATGATACACTTCATGA
TAAATAATAAAAAGGCTCCATTCAAAGCATTACTGATTTGGGTACTTGTA
TTTTTCAAACGTGGTCTATAGGAAGGATCCCAGGAAAGGCTATTTTGGTC
TCCTATTTCCTATTATTTCCTGTCACCTGTCAGTTGCATCTTTTCACATC
TGTTCTGAAATGGCTTATCATTTCAGCTCTGTTCAATGTTCAGCATTTTT
GACTCATTCTGCTTTTCTTAATCACTTCCCCAAAAGTATTCTTAATCTCC
CTCAATTGCCTCGCACATAGCAAGTGTATTACATCTCCCCCCACATCACA
ATCTATACTATTCATACAATGCATAATACTCCGCTTATAAAAATAACTTT
CTAATGGCGATAAATTCTCCTCCTTAATTTTAAACGTACCATCATATAGC
ACCCACTGTTTCTTTAAGTCTGGTATAGCCCTCGCTCATCTCTTTTGCCT
TTTTTTTTCTCTCTCTTCACTGCTTTTCTCACATTATTTGACTTTAATCC
CTACGAAGTACCCGACCCCTCCGCGCATTCTTCTTTTTTGCCATAACCCT
CTATTCCCCTTTTCTTACTCCCGGACTACCTCTATTTTTTCTATTCCCCG
TTCTGCATTTTTTTCCCCATTTTTCCCCA
NTTTTNTTTTNNNNATTTTTTCNTTTTTCNNTTCCCCCNNTTCCCCCTTT
NNNNTNCNTCGATGACATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAACTCCACTTTTGCCAATG
GACAGTAACTAGAGAGAGAAAAATAAATAGAGAAATAATAAAATGGATAT
TATTATCATAATGGACTTACCAAATATCTATGAAACAAGGTACCCAAACA
CAAAGGAATTAATCTCAGCACCTCAGATAATCTTCTCTAAAATTCCCCAT
GTAGTTTCATATACAAAGCCTCACAGATACAAGATTGAGCTAAACCCTTG
CATCTTATCATATCAAATTAGATTAAACTGGACATCAACAACAGAAACAA
AGTAAAGCCTACAATCTCATAGAAAATAAACAAATCTATAATCAATGACC
ACTGCATCAATGAAGAAACTAAGGGAAAAAAACCTTAAATACTTTGTACA
ATTCAATATTAATGAATGTACAACATACTCAAACCTGTGAGACACAATGA
AAGCATAGCTAAGAGAAAAGATTATTGCACTAATTGCCTTCACGATGAAA
TTGTACAGATCACATATTACCCACTAAATACCACCCCTGAAAGCTATTAC
CCATGACCCATATGCACCCCAGAAGAATAGAGGGCCTGAAATAATCCACA
CTGGCCTGAATTCAACCAATATAACAAAATACACCCCTATTTCGACACCC
CCTTATTCCGATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_f05.b1 MSMg01no086_f05.b1 CHROMAT_FILE:
MSMg01no086_f05.b1 PHD_FILE: MSMg01no086_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:01 2005
         (239 letters)



>mm_chr14_107960453_107961091
          Length = 639

 Score =  439 bits (227), Expect = e-128
 Identities = 236/239 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgatacacttcatgataaataataaaaaggctccattcaaagcattactgatttgggtac 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgatacacttcatgataaataatcaaaaggctccattcaaagcattactgatttgggtac 260

                                                                       
Query: 61  ttgtatttttcaaacgtggtctataggaaggatcccaggaaaggctattttggtctccta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtatttttcaaacgtggtctataggaaggatcccaggaaaggctattttggtctccta 320

                                                                       
Query: 121 tttcctattatttcctgtcacctgtcagttgcatcttttcacatctgttctgaaatggct 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 tttcctattatttcctgtcacctgtcagttgcatcttttcacatctgttctgaaatggtt 380

                                                                      
Query: 181 tatcatttcagctctgttcaatgttcagcatttttgactcattctgcttttcttaatca 239
           |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 tatcatttcagctctgttcaatgttcagtatttttgactcattctgcttttcttaatca 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)