Query= MSMg01no086_o17.b1 MSMg01no086_o17.b1 CHROMAT_FILE:
MSMg01no086_o17.b1 PHD_FILE: MSMg01no086_o17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:50 2005
(568 letters)
>mm_chr14_13666883_13667848
Length = 966
Score = 903 bits (467), Expect = 0.0
Identities = 538/567 (94%), Gaps = 13/567 (2%)
Strand = Plus / Minus
Query: 1 agtcacatcatttccacc---tgccaataaagggacacagagaagagtgagccaacaggc 57
|||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 644 agtcacatcacttccaccaaa--ccaataaagggacacagaggagagtgagccaacaggc 587
Query: 58 ctcgtcaagttttttctagctctctgccaacagatcagacccctttacccaaagattctc 117
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 586 ctcgtcaagttttttctagctctctgccaacagatcagaccccattatccaaagattctc 527
Query: 118 ctgtatgattgtcagaatttcctcaaacctaaacataaaactatagtttttcttgtttct 177
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 526 ctgtatgagtgtcagaatttcctcaaacctaaacat-aaactatagtttttcttgtttct 468
Query: 178 ttggctcttcatttgtgaaagctcctgtagagctcctgtgtcatgtagaaattatgttgc 237
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 467 ttggctcttcatttgtgaaagctcctgtagagctcctgtgtcatgtagaatttatgttgc 408
Query: 238 ataaatctgtatgcctttcctcttgttcttattgtattacatataatggagaacctagta 297
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 407 ataaatctgtatgcctttcctcttgctctttttgtattacatataatggagaacctagta 348
Query: 298 atggatgaagaaaaaaaataataatttcctcttgtctacactgttaaacctcctcctcaa 357
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 atggatgaag--aaaaaagaataatttcctcttgtctacactgttaaacctcctcctcaa 290
Query: 358 gaggaaagcaaccaaggctctcaggtggagctgccagatgagttgttcatgagcagaagg 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 gaggaaagcaaccaaggctctcaggtggagctgccagatgagttgttcatgagcagaagg 230
Query: 418 atctctgttcaaaagctttgctacctcttgtagtttgactatgaagtgctcccataagtt 477
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 atctttgttgaaaagctttgctacctcttgtagtttgactatgaagtgctcccataagtt 170
Query: 478 cacacgtttgaacacttggtccaaagttggtggtgctatttgtagaagactgagcctcac 537
|||| ||||||||||||||||||||| ||||||| |||||| || |||||||||||
Sbjct: 169 cacatgtttgaacacttggtccaaagctggtggt-----ttgtaggaggctgagcctcac 115
Query: 538 ttgagaaagtgagacaatgggaactag 564
||||| |||||||||||||||||||||
Sbjct: 114 ttgaggaagtgagacaatgggaactag 88
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 966
Length adjustment: 10
Effective length of query: 558
Effective length of database: 956
Effective search space: 533448
Effective search space used: 533448
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no086_o17.g1 MSMg01no086_o17.g1 CHROMAT_FILE:
MSMg01no086_o17.g1 PHD_FILE: MSMg01no086_o17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:50 2005
(347 letters)
>mm_chr14_13533814_13534560
Length = 747
Score = 642 bits (332), Expect = 0.0
Identities = 341/344 (99%)
Strand = Plus / Plus
Query: 1 agtattagagatgtaaaggcatctatagattgtctctatccagctcttccagatttatct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtattagagatgtaaaggcatctatagattgtctctatccagctcttccagatttatct 260
Query: 61 gcaaacactgtagaaatttacagatgacaaatgtcatttcctgatagtgggaacatgaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaaacactgtagaaatttacagatgacaaatgtcatttcctgatagtgggaacatgaat 320
Query: 121 gttattgtcactgcccatcgagcacaggccaaaggcatgctgcctctgaaggctctgctt 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 gttattgtcactgcccatcgagcacaggtcaaaggcatgctgcctctgaaggctctgctt 380
Query: 181 gttaacctatgtgtggcatttttcaaatatcagaattaaagccaaaggaaacatctttcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttaacctatgtgtggcatttttcaaatatcagaattaaagccaaaggaaacatctttcc 440
Query: 241 tcatccatgtctcttcaactttagctggcttatattctttctaacacataactccatggt 300
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 tcatccatgtctcttcaactttagctggcttaaattctttctaacacataactccatggt 500
Query: 301 ggttttcttttggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 344
||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 501 ggttttcttttggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 544
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space: 249444
Effective search space used: 249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
