BAC Information

Click to search

BAC

Clone NameMSMg01-086O21
Chromosome14 (Build37)
Map Location 46,362,639 - 46,363,206
singlet/doubletsinglet
Overlap genenone
Upstream genePtgdr, Ptger2, LOC100041591, 5730420B22Rik, LOC100041611, 6330416L11Rik, Ero1l, Psmc6, Styx, Gnpnat1, Plekhc1, EG382884, Ddhd1, EG637379
Downstream geneLOC666834, LOC100041685, LOC625377, LOC218963, LOC100041724, Bmp4, LOC100041732, LOC100041754
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086O21.T7 (MSMg01no086_o21.b1)MSMg01-086O21.TJ (MSMg01no086_o21.g1)
ACCAG306105AG306106
length721728
length of high quality
(start - end)
295 (58 - 352)568 (73 - 640)
definitionCHROMAT_FILE: MSMg01no086_o21.b1 PHD_FILE: MSMg01no086_o21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:51 2005CHROMAT_FILE: MSMg01no086_o21.g1 PHD_FILE: MSMg01no086_o21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCGCTAAACGACTCCTATAGGTAGAGGATCCGCGGAATTCTACTGGA
TCTACACCTCAATACAAAACCAGATGCTCTGAACCTGGTAGAAGAAAAAC
TAGGGAGTATCCTACCCGGCACAGGAAAGACTTTCTGAAAAGAATACTAT
TAGCTCTAAGATCAACAATTAATAAATAAACGGGATCTCATAAAACTGAA
ATGCTCCTGCATGGCAAAGGACTCTGTCATTCAAGAGGTAGTTAACAGAA
TGGGAAAGGATTTTTACCAACTTCACATTCAATAGAGAGGCAATACACAG
AGTATACAAGTAACTCAAAAAACTAGATATCGGGGGCTGGTGAGATGGCT
CATTATTTTTTAGCACCTGACTGCTCTTCCAAAGGTCCTGAGCCTAACAA
GATCTGACTCCCTCTTCTGAAGAGTCTGAAGACAGCTACAGTGTACTTAC
ATTAAATAAATAAATAAATAAATAAATAACTAAATAAATAAATAAATAAA
TAAATAAATAAATAAATAAATGAAAAAAACATTTTTTAAAACTAGATATT
CAGAATACAACCCAAATAAAAACGTTGTACAAGTATAAACAGAGACTTCC
CAAAAGTGGAAACTCAAACCGTTGAAAAACACTTTTAGAACATTCAGCAC
CTTTGGTCATCAGGGAAATGCATTACAACTATTTTGAGATTCCTCTTGAC
CCCTGTCTGGAAGAATAATAT
AATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTTATTTCATCTGCAATTGAAAAAAAT
CTATTCATTGAATTCTTAATTTCATTTATGACATTTTTTTTCGGCTGTAG
AATTCCAAATGTTTTAAACTACTAGTACACTCTACCATGTGCATTAGTTC
TCAGAATATTAATAGCAATTATTTCAAACATTATAGTGGATGCTTCCTGT
GTGTAGATCCATTTTAAATCTGTTTTTTTTAAATGAAGTAATTATTTCAT
CATCAATTAAATGTGAAGACCAGATGCCTAATGGAGGATGTAGTTTGTTT
CTTCATTTCATTCATCGGCTGTCCAGGAAATCATCCGATTTGTTCTCTTC
CCCTTCCCCATTCTAGAAAGAGCTTTTTTCCATTTTAAAACTGAACTCAG
TGTGAATAGGCACTTTTGGATGGCCTTCAGGATGGCCTGTTTCTATGCAC
TGTTAGTTGCCTCTGTGCTGATACACTGATCAATTGTTAGTCCCATACTG
TCAGTACACTGATTAGTTGTCAGTCCCACACTGTCAATTCACTGATCAAT
TGTCAGTCCTTTTTGTGTTTTCACCCCCTCTTCTTAGATACATTTTCTTT
ACTTGGTTATTAGACCCTTGAGAACCCTTTGTTCACAATTAATGTTTTAC
CTCCTCTCTCTCTCTCTCTCTTCACTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_o21.g1 MSMg01no086_o21.g1 CHROMAT_FILE:
MSMg01no086_o21.g1 PHD_FILE: MSMg01no086_o21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:51 2005
         (568 letters)



>mm_chr14_46362439_46363406
          Length = 968

 Score = 1098 bits (568), Expect = 0.0
 Identities = 568/568 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttatttcatctgcaattgaaaaaaatctattcattgaattcttaatttcatttatgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttatttcatctgcaattgaaaaaaatctattcattgaattcttaatttcatttatgac 260

                                                                       
Query: 61  attttttttcggctgtagaattccaaatgttttaaactactagtacactctaccatgtgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attttttttcggctgtagaattccaaatgttttaaactactagtacactctaccatgtgc 320

                                                                       
Query: 121 attagttctcagaatattaatagcaattatttcaaacattatagtggatgcttcctgtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attagttctcagaatattaatagcaattatttcaaacattatagtggatgcttcctgtgt 380

                                                                       
Query: 181 gtagatccattttaaatctgttttttttaaatgaagtaattatttcatcatcaattaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtagatccattttaaatctgttttttttaaatgaagtaattatttcatcatcaattaaat 440

                                                                       
Query: 241 gtgaagaccagatgcctaatggaggatgtagtttgtttcttcatttcattcatcggctgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgaagaccagatgcctaatggaggatgtagtttgtttcttcatttcattcatcggctgt 500

                                                                       
Query: 301 ccaggaaatcatccgatttgttctcttccccttccccattctagaaagagcttttttcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccaggaaatcatccgatttgttctcttccccttccccattctagaaagagcttttttcca 560

                                                                       
Query: 361 ttttaaaactgaactcagtgtgaataggcacttttggatggccttcaggatggcctgttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttttaaaactgaactcagtgtgaataggcacttttggatggccttcaggatggcctgttt 620

                                                                       
Query: 421 ctatgcactgttagttgcctctgtgctgatacactgatcaattgttagtcccatactgtc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctatgcactgttagttgcctctgtgctgatacactgatcaattgttagtcccatactgtc 680

                                                                       
Query: 481 agtacactgattagttgtcagtcccacactgtcaattcactgatcaattgtcagtccttt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agtacactgattagttgtcagtcccacactgtcaattcactgatcaattgtcagtccttt 740

                                       
Query: 541 ttgtgttttcaccccctcttcttagata 568
           ||||||||||||||||||||||||||||
Sbjct: 741 ttgtgttttcaccccctcttcttagata 768


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)