BAC Information

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BAC

Clone NameMSMg01-087B02
Chromosome14 (Build37)
Map Location 107,997,477 - 107,997,855
singlet/doubletsinglet
Overlap geneLOC668752
Upstream geneLOC668748
Downstream geneEG668754, LOC668757
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087B02.T7 (MSMg01no087_b02.b1)MSMg01-087B02.TJ (MSMg01no087_b02.g1)
ACCAG306203AG306204
length780720
length of high quality
(start - end)
411 (114 - 524)410 (73 - 482)
definitionCHROMAT_FILE: MSMg01no087_b02.b1 PHD_FILE: MSMg01no087_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:02 2005CHROMAT_FILE: MSMg01no087_b02.g1 PHD_FILE: MSMg01no087_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCCCCNNNCCCNNNTTTCCNNCCTCCCCTTCNNTCTNCCACCTTCCNN
NCTTATTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATCCACTGTATGTCGTTGGTGGCCTCATATCAGCTGGTGTATA
CTGTCTGTTTGTTTGGTGGTGCAGTGTTTGAAAGATCTCAGGGGTCCAGA
TTAATTAAGACTGCTGGTCCTTCTACAGGATCACCCTTCTCTTTCTCCTT
CTCTTTCAACCTTCCCTAATTCAACAACAGGGGTCAGCTGCTTCTGTACA
TTGGTTGGGTGCAAATATCTGCATCTGACTCTTTCAGCTGCTTGTTGCAT
CTTTCAGAGGGCAGTCATGATAGATCCCTTTTTTGTGAGTGCTCAGTAAT
AGTGTCAGACTTTGGGACCTCCTGTTGACCTGGATCCCACTTTGGGCCTG
TCACTGAACCTTCTTTTCCACAGGCTCCTCTCCATTTCTTTCCCTGTAGT
TCTTTCAGACAGAAACAATTATGGGTCAGAGATGTGACTGTGGGATGACA
ACCCCATCTCTCACTTGATGCCCTGTCTTGCCGCTGGAGGAGGGCTCTAT
AAGGATAAAGTTTTAAAATATTCTTTTTTGTTTGACTGCTGCTTAATGAC
ATTACAATTGTAGTTCTCTTTCCTGNGGGCTCACACTTTTTATTTACAAC
AATTTAAGACTTAAAAATTACCTTGTATAGGAACTTCATAATTTGGACCC
AGACCTTTCCTAGTAGGTGAGGTAATGGTC
AATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTCTTTCTCCATGATCTTCTGTACCCT
CTGTTTGCTATGCTGGACTCATGTGAGTTTGTGAATTGGACTTATTCTAT
CTCTGACTCACTGTGTCAAATCTTTCTCTGATCTGTCACTTTGTCTGCCC
CTCAACTAGATGTTATTGTTTGGGATTAAAAGTGTATACTGAAGGTTTTT
CTGCAGGTGAACCCTTGCCAGAACAGCCGTGTTACTGGATTAAAATTCCT
CTAGACTCATGAATATTAATATGTATTCAAATACCTCTTTAAAATTACTT
TGTTAATTATTTTCCAATATTTCTTAATTGTCCTGTTAGATTTTTTCTTT
ATCTATTTAAAATATTGTATTCTGTAGTACCTTCCTTGGAAAATTCCCTC
CTACCTCATGGTACCTTACCAGCTAAGCAATCTCATTGAGTATTCCAAAG
AAGTCACACATATAAAACGCATAAAGGTGTTATCCATAAATAGAAAACAG
TTCAACATTTGTCCCTTTTGGTTCAATGCCTACTTTTGTTTTGACTTGCA
CTGCGTGCGTGCGTGTGTGTGTGTGTCGCGCGCGTATATGCCTACCCCTC
CTACATTTTCCCCCCCCCTCCTTTTCCCCCTTTTTCCTCCATTTTCACCC
CTTCATTACCATTCTTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_b02.g1 MSMg01no087_b02.g1 CHROMAT_FILE:
MSMg01no087_b02.g1 PHD_FILE: MSMg01no087_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:03 2005
         (410 letters)



>mm_chr14_107997046_107997855
          Length = 810

 Score =  725 bits (375), Expect = 0.0
 Identities = 378/379 (99%)
 Strand = Plus / Minus

                                                                       
Query: 32  tttgctatgctggactcatgtgagtttgtgaattggacttattctatctctgactcactg 91
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 tttgctatgctggactcatgtgagtttgtgaattggacttattctatctctgactcactg 751

                                                                       
Query: 92  tgtcaaatctttctctgatctgtcactttgtctgcccctcaactagatgttattgtttgg 151
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 tgtcaaatctttctctgatctgtcactttgtctgcccctcaactagatgttattgtttgg 691

                                                                       
Query: 152 gattaaaagtgtatactgaaggtttttctgcaggtgaacccttgccagaacagccgtgtt 211
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 690 gattaaaagtgtatactgaaggtttttctgcaggtgaacccttgccagaacagccatgtt 631

                                                                       
Query: 212 actggattaaaattcctctagactcatgaatattaatatgtattcaaatacctctttaaa 271
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 actggattaaaattcctctagactcatgaatattaatatgtattcaaatacctctttaaa 571

                                                                       
Query: 272 attactttgttaattattttccaatatttcttaattgtcctgttagattttttctttatc 331
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 attactttgttaattattttccaatatttcttaattgtcctgttagattttttctttatc 511

                                                                       
Query: 332 tatttaaaatattgtattctgtagtaccttccttggaaaattccctcctacctcatggta 391
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 tatttaaaatattgtattctgtagtaccttccttggaaaattccctcctacctcatggta 451

                              
Query: 392 ccttaccagctaagcaatc 410
           |||||||||||||||||||
Sbjct: 450 ccttaccagctaagcaatc 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space:   321201
Effective search space used:   321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)