BAC Information

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BAC

Clone NameMSMg01-087H18
Chromosome14 (Build37)
Map Location 82,784,591 - 82,784,776
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087H18.T7 (MSMg01no087_h18.b1)MSMg01-087H18.TJ (MSMg01no087_h18.g1)
ACCAG306502AG306503
length726751
length of high quality
(start - end)
371 (20 - 390)186 (130 - 315)
definitionCHROMAT_FILE: MSMg01no087_h18.b1 PHD_FILE: MSMg01no087_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:38 2005CHROMAT_FILE: MSMg01no087_h18.g1 PHD_FILE: MSMg01no087_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCTCCTATAGTTGCGAGGATCCGCGGAATTCTTTGTTCAGTTCTCGAGC
CCCATTTTTTAAGGGGGTTATTTGATTTTCTAGAGTCCACCCTCTTGAGT
TCTTTATATATATTAGATATTAGTCCCCTATCTGATGTATGATAGGTAAA
GATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATTGATGGTGTCTT
TTGCCTTGCAGAAGCTTTGCAGTTTGATGAGGTCCCATTTGACAATCCTC
GATCTTACCGCACAAGCCATTGCTCTTCTATTCAGGAATTTTTTCCCTGT
GCCCATATCTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTT
TATGGGAAGTTCTTTGATCCACTTAGATTTGACCTTAGCACAAGCACCAC
AGGAATGGGTTGATTTACATTCTTCTACATGATAACAACCACTTGTGCCA
GCACGATTTGTTGAAAATGCTGTCTCTCTTCCACCGTATGTCTTTAGCCT
CCCTTGCCTAAGATCTCGTGTCCATATGTGCGCGTGCTCATATCTCGTTC
CCTTTATTCCATTCCTTCGTCTTGCCTGACGTTCTCCATCGCCTATGTAA
TTTCCTATTTTCCCTTCCTTTCTCCGTCTTACAACTTTTTCGCCTATATT
TTCTGGACTTAGTTTCGCTCTATTCCCACATCTTTATTGTCTATCTCTTT
CCTTACCCTTTCTTTTTATTTCCCCC
CATGAAGTGATAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTCATAAAACAGAAATACATGATATTGAAGGACTAAGTAAGT
TTTCATGGAACTTTTATGCCAAATACCTGTGTAAACCTTACCGAAGATGT
GACATGTTCATTGGTTTCAACCAATTCATTGATGCAATCAGGTAAAGCCT
GAGGCTTGCTAATAGGAAATAAACAGGTTATGCTTGACTCCAAGACTAAT
ATATTTTTTATTCTTACATGCTGACTTGAAGTACAAATGCTTCAGGACCA
AACCATTCAGATACCTTTTTTATTTAACAACGTCAGTATTTTATTTCACT
GTCATTTGTTTTACCTACCTACCCACCCACGAAAAAAAAATACTTCTTAA
GCATATAATAACACTCACTTAAAACTTACAAGACATTTTCACAACCTAGA
GCCTTTACGCCTTGCTATAAACTTACACATTAACACATTTTTATCTTTTC
ACGTCAACTATAGGGACAAACTACCATTCCCTTACCTGCATTTCCACTTT
ATACAACCCCGACTTTACCCTGTACCTATTTTTCACCAGCCTGACCGATA
TCCTATTTATACTTATGCATTTCCCCTATACATAGGTTAGTCTTACCCAT
TTCCCTTCTTCATTTCTTCTTTTATTTTTTTCCTCCCCCCTTCGTTTTTC
CCCCTTTTTCCATCTCCTTTTCCTTGCTGTCTACTTACCCTTCCTTTACC
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_h18.g1 MSMg01no087_h18.g1 CHROMAT_FILE:
MSMg01no087_h18.g1 PHD_FILE: MSMg01no087_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:38 2005
         (186 letters)



>mm_chr14_82784391_82784976
          Length = 586

 Score =  329 bits (170), Expect = 7e-95
 Identities = 182/186 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtaaaccttaccgaagatgtgacatgttcattggtttcaaccaattcattgatgcaatc 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tgtaaaccttaccgaagatatgacatgttcattggtttcaaccaattcattgatgcaatc 327

                                                                       
Query: 61  aggtaaagcctgaggcttgctaataggaaataaacaggttatgcttgactccaagactaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aggtaaagcctgaggcttgctaataggaaataaacaggttatgcttgactccaagactaa 267

                                                                       
Query: 121 tatattttttattcttacatgctgacttgaagtacaaatgcttcaggaccaaaccattca 180
            |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aatattttttaatcttacatgttgacttgaagtacaaatgcttcaggaccaaaccattca 207

                 
Query: 181 gatacc 186
           ||||||
Sbjct: 206 gatacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 586
Length adjustment: 8
Effective length of query: 178
Effective length of database: 578
Effective search space:   102884
Effective search space used:   102884
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)