BAC Information

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BAC

Clone NameMSMg01-088B22
Chromosome14 (Build37)
Map Location 90,392,523 - 90,392,831
singlet/doubletsinglet
Overlap genenone
Upstream geneEG328451
Downstream geneLOC100043336
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088B22.T7 (MSMg01no088_b22.b1)MSMg01-088B22.TJ (MSMg01no088_b22.g1)
ACCAG306960AG306961
length722725
length of high quality
(start - end)		613 (39 - 651)544 (75 - 618)
definitionCHROMAT_FILE: MSMg01no088_b22.b1 PHD_FILE: MSMg01no088_b22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:29 2005CHROMAT_FILE: MSMg01no088_b22.g1 PHD_FILE: MSMg01no088_b22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAC
AACTGATGAACACTGAATGGCTGAAACGCATCTGAAAAATATGTTCAACA
TACTTAATCATCAAGGAAATGCAAATCGAAACAACACTGAGATTCTACCT
CACACCAGCCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCT
GGCGAGGATATGGAGAAAGAGGAACACTCCTCCATTGTTGGTGAGATTGC
AAGCTGTTACTACCACTCTGGAAATCAGTCTGGCGGTTCCTTAGAAAATT
GGACATAGTACTACTGGAAAATCCAGCAATACCTCTCCTGGGCATATACC
CAGAAGATGTTGCAACTTATAATAAGGACATCTGCTCCACTATGTTCTTA
GCAGCCCTATTTAAAATAGCCAGAAGCTGGAAAGAACCCAGATGTCCCTC
AACAGAGGAACAGAAAATTGGATACTGAAAATGTGGTACATTTACACAAT
GAAGTACTACTCAGTTATTAAAAAGAATAAATTTCTGAAATTCATAGGCA
AATGAATGTATCTAGAGGATAACATCCTAAGTAAGTTAACCCAAACACAA
AGGAAGTCACATGATATGCACTCAATGATAAGTGGATATGATCCCAGAAA
ATTAAACTGCCCAAGATACGATTTTGCAAACACATGATACCCAAGAAGAA
GGAAGATCAGTGTGTGGATACT

CCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTAGGTATGCACCAGCTTGACTTCT
TTGTATTTACTGAGTTGTAGGATTGTTGTGGATTTCCCCTGAATGAGAAA
GTCCAATAGATATTTATGGACAGTCAAAGTAATGGACTGGAATGAGAGCA
TAAAATATCAAGAGGGAAGAAAGTGGGAGGCTGTTGTGGAATAAAATGAC
CATCTGTAGGGTTGTATGGAGTCCTAACTCAGTAGAATATGTTATGTACA
TATATGAAAGGCAATCTAAGTATAGTCACCAAATAACAGAGCCCTCAATG
GCCACCTATTGTCACAAAATGGAGCATATAATGCCAAGAATTGGTTATAT
TTGGTCAAATTAATTCCATGGTAATACTCAAACCCACCGAGGCAATTGGC
AAGATTATTAGAGACTCTACAAACAGATCATAAAGCCCCGGTGCTGAAGA
CAGCACCTATTTTTGATATTTTTATTATCAGTTACTTCACATTATTCATG
AGGTTAGAGATGAGTTATGGTTTTGATAATTGTGTTACCATTTTAATGTA
TATAATATCATACTGAAGTCAACAGTAGAAGGTTATGGTCATGATTTCTA
GAGAAAAAAAGGATATGAAGGAACTTCAAAATTATAGTTTGACAAGAGTA
AAAGTTGGTTGCTTATTTTAAAGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_b22.g1 MSMg01no088_b22.g1 CHROMAT_FILE:
MSMg01no088_b22.g1 PHD_FILE: MSMg01no088_b22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:29 2005
         (544 letters)



>mm_chr14_90391888_90392831
          Length = 944

 Score =  598 bits (309), Expect = e-175
 Identities = 309/309 (100%)
 Strand = Plus / Minus

                                                                       
Query: 236 ggcaatctaagtatagtcaccaaataacagagccctcaatggccacctattgtcacaaaa 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 944 ggcaatctaagtatagtcaccaaataacagagccctcaatggccacctattgtcacaaaa 885

                                                                       
Query: 296 tggagcatataatgccaagaattggttatatttggtcaaattaattccatggtaatactc 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 tggagcatataatgccaagaattggttatatttggtcaaattaattccatggtaatactc 825

                                                                       
Query: 356 aaacccaccgaggcaattggcaagattattagagactctacaaacagatcataaagcccc 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 aaacccaccgaggcaattggcaagattattagagactctacaaacagatcataaagcccc 765

                                                                       
Query: 416 ggtgctgaagacagcacctatttttgatatttttattatcagttacttcacattattcat 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 ggtgctgaagacagcacctatttttgatatttttattatcagttacttcacattattcat 705

                                                                       
Query: 476 gaggttagagatgagttatggttttgataattgtgttaccattttaatgtatataatatc 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 gaggttagagatgagttatggttttgataattgtgttaccattttaatgtatataatatc 645

                    
Query: 536 atactgaag 544
           |||||||||
Sbjct: 644 atactgaag 636


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space:   498756
Effective search space used:   498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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