BAC Information

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BAC

Clone NameMSMg01-088J19
Chromosome14 (Build37)
Map Location 27,721,424 - 27,721,657
singlet/doubletsinglet
Overlap geneAsb14
Upstream genePlac9, D14Ertd449e, Cphx, 1110051B16Rik, LOC100039468, LOC100039484, LOC100039175, LOC100039192, LOC100039213, LOC100039227, LOC100039503, LOC100039246, LOC100039257, LOC100039280, LOC100039293, LOC100039527, LOC100039538, 4933413J09Rik, Slmap, LOC100039353, LOC665279, A630054L15Rik, Arf4, E430028B21Rik, 4921531P07Rik, Dnahc7c
Downstream geneAppl1, Hesx1, Il17rd, LOC665333, Arhgef3, LOC100040147, Ccdc66, LOC665370, Erc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088J19.T7 (MSMg01no088_j19.b1)MSMg01-088J19.TJ (MSMg01no088_j19.g1)
ACCAG307322AG307323
length717803
length of high quality
(start - end)
234 (114 - 347)40 (133 - 172)
definitionCHROMAT_FILE: MSMg01no088_j19.b1 PHD_FILE: MSMg01no088_j19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:09 2005CHROMAT_FILE: MSMg01no088_j19.g1 PHD_FILE: MSMg01no088_j19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCGGCGCTATACGACTCCTATACGGAGAGGATCCGCGGAATTCTTGCCT
ATCAACAGAAGACTTTTGCTTAAATCCCAACAAAACACAAGAGTGAGACA
CAGATTTAGACCCAGACGAGACTGCTTTCCTCAAAGACGACAGAGCTCCT
GTTTACTTTTTGATTTTCTAGTCAATAACTTTAGATGTCTCCTAGGTCAC
ATGTGTTAGGCATCATGCTAAAATTCAACAGCATTTGTTGGAGATCTGCT
TCCTGTATAGAAAAGAAGAAAGTGTACAAAGGGCAGGGCTGCTCTGTAAT
ATCAGGTGCTCTGTCGGGTATTGCAGTCCTAGACTACGTGTTACTAATTA
AAATAAAAATAAAGCTTCAGGTCACAAGGAGAAAGAAGATAATTACATTG
TTGCCCTTTTATTATATCTGTGTACAAGGTAAGCTTATTTGAAAAAAGAA
GCTGTAGATACACTGTATCATTGGACACATTAACGATGAACTCAGAGATC
TGTACATTTTCGGAGCTTAGTGTCCACCGTATTTAAACCACAATCTAGAA
CGCTCATTATATAACCGTTATAATACTGTGCCTGTATTTATGAAAGAGCC
CCCATTTGTTACAAGTGCTGCATCTTGTCCCTTTATAAATATTATCCAAA
ATTTGATAATGTTTAAATTTTCCCCCTAGCTTCTGCTTTAAATATTTGAA
TATAAAGTAGGTAGTTT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTNNNNNTTTTTA
TCTAATATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTGCCTCTGCTTCCCA
CACCATAGTAGCGTTGGGATTAGATTCCCCTAGCAGGTCTGATGTTCATA
TGGGTTCCAGAGATCCACACTCAGGCCATCAGACTTGCATGGCAAGTGCT
TTTACCTGCTGAGCCATCTCCTGGGCTTTATTAGTCTTTCATGCACAAGC
ATAAGTGTATGGAGTATTAGAAAGAAATTATTTGACTACTATTTAAAGTT
TTTAAAACATGTATTTGAGTTCTTTCTTTAAAAAATGCATTTGAACTTCC
TTCCGCCTTGAATTTTTATATTTATCCGCCCCCCCCCCCGGTCGTTGTTT
TTTGCGTTCCTGATTGTTACAGCACCCCCATTAAAAAAAAATCTTTCGTT
GTTGAGTGCCTTGTAAAAGGATAAGTACTTTCTTTCCCTATGTTAATTTC
TCTGTACGGATTTGTGCCTTTCATGTCTCTAGTTATTTTAAGTTTTAACT
TGTTTTTTTATCTTTATTACTCCCTTCTCTTATTTGTTTTTTATTCACGT
TCCCCCCTTCTCTTTTGGCTTATTTTGTTTTTTTTATCATTCCCTGGTTT
CCAATACAACTCGTCTTCTCAATTTTTTCCTTCTTTATTTTGTTTTTTTT
AATCTTCACCCCATCTTTTTTTTTTTTTCCGCGTACTTTTTATCTATTGT
TCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_j19.b1 MSMg01no088_j19.b1 CHROMAT_FILE:
MSMg01no088_j19.b1 PHD_FILE: MSMg01no088_j19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:09 2005
         (234 letters)



>mm_chr14_27721224_27721857
          Length = 634

 Score =  408 bits (211), Expect = e-118
 Identities = 229/235 (97%), Gaps = 2/235 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agacgagactgctttcctcaaagacgacagagctcctgtttactttttgattttctagtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 agacgagactgctttcctcaaagacgacagagctcctgtttactttttgattttctagtc 375

                                                                       
Query: 61  aataactttagatgtctcctaggtcacatgtgttaggcatcatgctaaaattcaacagca 120
           | |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 374 agtaactttagacgtctcctaggtcacatgtgtcaggcatcatgctaaaattcaacagca 315

                                                                       
Query: 121 tttgttggagatctgcttcctgtatagaaaagaagaaagtgtacaaagggcagggctgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 314 tttgttggagatctgcttcctgtatagaaaagaagaaagtgtacaaaggacagggctgct 255

                                                                  
Query: 181 ctgtaatatcag-gtgctctgtcgggtattgcagtcctagactacgtgttactaa 234
           |||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ctgtaatatcagag-gctctgtcgggtattgcagtcctagactacgtgttactaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)