BAC Information

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BAC

Clone NameMSMg01-088J20
Chromosome14 (Build37)
Map Location 86,904,795 - 86,905,311
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043301, EG629815, LOC100043306, LOC100043778, LOC100043310
Downstream geneLOC100043311, Diap3, EG665324, Tdrd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088J20.T7 (MSMg01no088_j20.b1)MSMg01-088J20.TJ (MSMg01no088_j20.g1)
ACCAG307324AG307325
length724726
length of high quality
(start - end)
524 (37 - 560)524 (77 - 600)
definitionCHROMAT_FILE: MSMg01no088_j20.b1 PHD_FILE: MSMg01no088_j20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:09 2005CHROMAT_FILE: MSMg01no088_j20.g1 PHD_FILE: MSMg01no088_j20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCC
ATTATGAAATCCTTCATTGTTATTTATGTAAACCCAGCCAACAAGCTATT
GATGTTATTAGTCTCCTCTACCACTGGAGGGCAAAGAATGCCCCTTTTAA
GTTGACAACAAGGTACCTAAATTTGGGGAAAGCAATGAAAGACTGAAAAA
AGCAAGCATTTTATCAAAACTATGAGCTATAGTTACAGAATACTTACTGT
TTACAAAAATCTGCCACAGAGGAAAGATACAGCCACAACTTTTAGCCCCA
AAATCCTAACCTCCTGCCTGTAGTGAAGAAATGAATTACTTCCATAATTA
TGGTCAGAAAACGAGATTTTTCAAAATATGGACTATAATCGCACACTGCT
TATTGTTCCCCAAAAATCTTTCACTGTAGCAGGATATAACTGCAGTATTA
ACCTCAAGGCCCAAAATTATGTCAATGATGCAAAAATATAATCTCCTTTT
GGTAATAATGGCCAGAAAAGAACTTTAACAAAAAGAAATACAGAAGCCAT
TTGTTACAATTTAGACTACTTATTTTTATTTCTTACTGATCTACAATTCA
TAAAAAATAATACCATTGGCTTATCTATATAAGATATAGAAAACACAGTG
AGATGCTGATTATAGTGCCTATTACAGAGCACAGAATGGCCACCAATGAT
GGTGCTGTATTGTTTATTTTTAAN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAGACCATGATCTTGCTCAAGGA
CATTTCTAGGACTGTTGGAACACTGGCGGAAGGCTTAAGCCATGTCAGAA
TTCAATTTTAAAAAGCACTTATAATAAGAAAATACTGAAAGAGAGCACAT
GGATCCATACACTAGACTAACGCGGAAATGGAACGCGGGAATGAAAAATT
ACTGTATGGTTAGGGAACGCTAGACTCCAGGAGGAGAGCTTCCTTGAAAC
TCTTTTACCTCATGAGTGACTTTTAAGCCTCTCAGCTTGTCCAGTTGTCT
CGACTGGAGCATAGCACCTTTATATTTATAATAAGCCTTGAAAGCACTAG
AGCTGGGCAGATATCAACCCTATATGTTATTTTCTTTTACTGCCAATAAC
CCAAATATATCACTTGCCATGTTCCACCTGGGCCACTCCTACTTCAACTG
TCTGGCCCTCATGGCTATGTGTTTATGATCAACTACCCCACGACGTCCTT
CTTCTTCCTCTTTTCCCTCTTACATAGTCCCTGCCTCAGACACCAAGCCT
GTGAACCAAAGCCCTGCCTACCTCTCTATGCCCAAGTACAGTCTGTAGGC
ATTTATTAACCAAGTCTGGATAACTTGCGCGTTGTGCCAAGATTTATATG
AGAAAAGCTTGTATACATAAGGATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_j20.b1 MSMg01no088_j20.b1 CHROMAT_FILE:
MSMg01no088_j20.b1 PHD_FILE: MSMg01no088_j20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:09 2005
         (524 letters)



>mm_chr14_86904588_86905511
          Length = 924

 Score =  984 bits (509), Expect = 0.0
 Identities = 515/517 (99%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattccattatgaaatccttcattgttatttatgtaaacccagccaacaagctattgat 67
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattccattatgaaatctttcattgttatttatgtaaacccagccaacaagctattgat 267

                                                                       
Query: 68  gttattagtctcctctaccactggagggcaaagaatgccccttttaagttgacaacaagg 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gttattagtctcctctaccactggagggcaaagaatgccccttttaagttgacaacaagg 327

                                                                       
Query: 128 tacctaaatttggggaaagcaatgaaagactgaaaaaagcaagcattttatcaaaactat 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tacctaaatttggggaaagcaatgaaagactgaaaaaagcaagcattttatcaaaactat 387

                                                                       
Query: 188 gagctatagttacagaatacttactgtttacaaaaatctgccacagaggaaagatacagc 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gagctatagttacagaatacttactgtttacaaaaatctgccacagaggaaagatacagc 447

                                                                       
Query: 248 cacaacttttagccccaaaatcctaacctcctgcctgtagtgaagaaatgaattacttcc 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 cacaacttttagccccaaaatcctaacctcctgcctgtagtgaagaaatgaattacttcc 507

                                                                       
Query: 308 ataattatggtcagaaaacgagatttttcaaaatatggactataatcgcacactgcttat 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ataattatggtcagaaaacgagatttttcaaaatatggactataatcgcacactgcttat 567

                                                                       
Query: 368 tgttccccaaaaatctttcactgtagcaggatataactgcagtattaacctcaaggccca 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tgttccccaaaaatctttcactgtagcaggatataactgcagtattaacctcaaggccca 627

                                                                       
Query: 428 aaattatgtcaatgatgcaaaaatataatctccttttggtaataatggccagaaaagaac 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 aaattatgtcaatgatgcaaaaatataatctccttttggtaataatggccagaaaagaac 687

                                                
Query: 488 tttaacaaaaagaaatacagaagccatttgttacaat 524
           ||||| |||||||||||||||||||||||||||||||
Sbjct: 688 tttaaaaaaaagaaatacagaagccatttgttacaat 724


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)