BAC Information

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BAC

Clone NameMSMg01-088L21
Chromosome14 (Build37)
Map Location 110,494,831 - 110,495,056
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC640892
Downstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088L21.T7 (MSMg01no088_l21.b1)MSMg01-088L21.TJ (MSMg01no088_l21.g1)
ACCAG307419AG307420
length709695
length of high quality
(start - end)
237 (116 - 352)229 (114 - 342)
definitionCHROMAT_FILE: MSMg01no088_l21.b1 PHD_FILE: MSMg01no088_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:19 2005CHROMAT_FILE: MSMg01no088_l21.g1 PHD_FILE: MSMg01no088_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTCT
GTACTCCAATCCCACAGTTATCTGGCAACAGCCATTTAGGCCTGGCCCAC
TATAAAAGTTGCCGCTTGACCCCTCCCCCTTACTCTCTTACTCTTGCCTC
TCTGCCCTGCCCTCCTGCTCTCTCTTCCTCCACATTCCTTTCTTCTCTCT
CTCCATGAGGCCATGGCCAGCCTCTAATTCTCTCCTCTCTGCCTTCTCTG
CCTCTACTACCTTCCTAGCTCCCCTTCCCAGACACTTCTCCCTGCAAAAG
ATATTTAACCTAATGCCTGTCCTGAGAAAGGGGGTAAGGTTTCACTCCTC
ACATCTCTCAGCCATGGCAATAAAAGCCCTCAAACCATGGATAGCTTCTT
CACATAAAGATCCACCATACTGGTGCAATGGAGCAGGTCTTCCTCTATAG
AGTGCCATCTAACATCTTGCAAGAGGCCTCCCTGGGCTCTTAGCCAAGTT
TTCCACAAAGTCAAGTTGTCTGCATGAGCAAGTCCAGGACTCTTGTTGCT
GAGTCTCCTCCCCCTCTTTTTTCTATGACCTGCACTAGAATGTGCCCGAA
GCCTGAAACTCCATTCTCATCTTGGCATCTTTGGCATCTAGATAAATCTG
TTCTGCTTAAAGTGTGATAACCTGCCAACCTTGACATTCTTTGAATGCCT
GGGGAACAA
TGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTATAGAAGGTAAAATTTCATGAATTGGAAAGAATAAGAAATTTTT
ACCGAATAAGGAATGAATAAAATACTCTTCAGGTTGTAACATGAGGTTTG
ATGCTGGGATCATATACATGGCATGAAATTGAAAGAAATTTGATAACATG
ATAAGATTCTTGATCTATTGTCAGTTGAAAGTTTGATATTAGTTTTCATA
CTCAAAGCAATGCTTTGCCTCTTTATTTAAGCTTGTTAGTGGAGCTGTTG
ATCTTATCCTGAATCGGCAAAGCAATGTTGTGACCATTGTTTATTGTTTC
CGCCCACCAACAATCCTATGGAAACAAGAGGTGTCTCTCACGCTAAAACT
CATTTTCACCAAAGATCTCCGTATCCACACACACCCAAGACCTTAAGATG
TGAAAACAATCAATGAATCCTAATCATTTTAAGCTACTGAAAGGCTTACA
GTATAGTGAAGGTTATCCTATTCTATTTTTTCAAATAACCTCTTGATATC
TATGTCTCACCACGACCCTCCCCTAATACCTAGCCCCCACTGGGGACTTT
TCTTTTCTTTTCTTTTCTTTTCCTTCCGTTTCTTCCGTTTCTTTTCTTTC
TTTTCTCTCCCCCCCTTTTTTTTTCCCTTTTTTCTTTCTTCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_l21.g1 MSMg01no088_l21.g1 CHROMAT_FILE:
MSMg01no088_l21.g1 PHD_FILE: MSMg01no088_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:19 2005
         (229 letters)



>mm_chr14_110494631_110495259
          Length = 629

 Score =  406 bits (210), Expect = e-118
 Identities = 222/226 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaataaaatactcttcaggttgtaacatgaggtttgatgctgggatcatatacatggca 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 tgaataaaatactcttcaggttgtaacatgaggtttgatgctgggatcttatacatggca 260

                                                                       
Query: 61  tgaaattgaaagaaatttgataacatgataagattcttgatctattgtcagttgaaagtt 120
           ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaaattgaaagaaacttgatatcatgataagattcttgatctattgtcagttgaaagtt 320

                                                                       
Query: 121 tgatattagttttcatactcaaagcaatgctttgcctctttatttaagcttgttagtgga 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 tgatattagttttcatactcaaagcaatgcttcgcctctttatttaagcttgttagtgga 380

                                                         
Query: 181 gctgttgatcttatcctgaatcggcaaagcaatgttgtgaccattg 226
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctgttgatcttatcctgaatcggcaaagcaatgttgtgaccattg 426


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space:   136400
Effective search space used:   136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)