BAC Information

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BAC

Clone NameMSMg01-088O12
Chromosome14 (Build37)
Map Location 18,207,320 - 18,396,349
singlet/doubletdoublet
Overlap genenone
Upstream geneTop2b, Rarb, Tpi-rs9
Downstream geneThrb, LOC627608, Nr1d2, LOC632287, Rpl15, Nkiras1, Ube2e1, LOC627717, LOC238963
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088O12.T7 (MSMg01no088_o12.b1)MSMg01-088O12.TJ (MSMg01no088_o12.g1)
ACCAG307542AG307543
length677696
length of high quality
(start - end)
596 (57 - 652)284 (56 - 339)
definitionCHROMAT_FILE: MSMg01no088_o12.b1 PHD_FILE: MSMg01no088_o12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:32 2005CHROMAT_FILE: MSMg01no088_o12.g1 PHD_FILE: MSMg01no088_o12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,395,977 - 18,396,349)(18,207,320 - 18,207,603)
sequence
GCGGCCGCTATACGACTCACTTTCAAAAGAGGATCCGCGGAATTCCCTTC
TGCGGTCCGAAGGGAAATAGGAAAATTGGTTTTGTCAAAGGAGAGATAGC
TGGCATCATGTACCTTACAGTCTCTATGTGCTGAGGAAGTTCATAGCTTA
GCTGAAGTCCTGACTAAAAGGCTGGATGGGTGAGCTAGCTGTTCTGAAAA
TGTCCTGGAAGCAAGTCTTTAAAGGAAACTGCTTTCGATGTGGTTGAGGT
ATAATCAAGCATAAATGGAATGGAAGGTTGCAGAAGCTCAGCATCCCAGA
GCGTGAATCTTATCAAGGCTGTCTTTCTCTTTCATTCTACAATATACACA
CCTTGAAAGGAACACACAGCTCTATAAAGACATCTGTATGGAACTTGCAG
GGAGCACATACCTATTAAGGAAGATCAATAAAGAAACACAGCTGCCTTTC
TTTAGAGGTTAGTTTGATCACATAATCAAACTACTACATAATTTGACATT
CATGCTATCTTTAAGTAAAAAGAAGTTTGTATGCAATAAGTGTTATTGGC
TGTACCTAGACAGTTTAGTCTCAGTCAGTCCCCAGAGCTGTCTCTGTACT
CAAAGTCATATACACCACCTATCTTGTTGATCTTGATCGTCACCTTCTTC
TTGTCCACAGCCAAGGTTTCAGGAGGT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCATGAAACTACCAGGAGGTAGGGCCTGATTAGTTTAAGTAATTAA
CCTAGGAAGAGCTCTGAAGGCAATATCTACCCCAGCTCTGGTCTATCTCT
AGACTTCCTGTGTGCACCATGAAAACAAGGACCCAGCCTTCCTGTTCTGA
CACTAGAGATGGAGTGACTTCTGCAGCCATGCCTTCCCTGGCCAATGAAC
AGAAGCCCTACGTGACCTCAAACCAGACAAACTTTCCTCTCTTAAGTATC
TACACTCAGGTATTTGGTGACAGAGATGAGATGTGAAAAGACACATCATG
CACAACGCAAAGCTGCATTAGGAAACCTAACAAGGTCCGTGTGCAGGTTG
GGTGGGATTCAGCAACTTGACCACCTATTCTCTTTTTCTAGCATCTATTT
TCCTATTTGCATATGTGTGCTGAACAAACTATGATGAGCAAGCCAGTAAG
CAGCACCCTTCCCTGGCTTCTGCATTAGCTCCTACTTCCAGGTCCTTGCC
CTGTTTGAGTTCCTGTACTGACTTCCTTTATGATAAACAGCACTGTGTAA
GTGTAACCTGAACAAACCCCTTTTGTCTCCCACATGACCAAAAATGGTCA
TGGTATTTCATTGCAGCAATATAAAACCCTAAAACAGGGGTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_o12.b1 MSMg01no088_o12.b1 CHROMAT_FILE:
MSMg01no088_o12.b1 PHD_FILE: MSMg01no088_o12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:32 2005
         (596 letters)



>mm_chr14_18395354_18396349
          Length = 996

 Score =  667 bits (345), Expect = 0.0
 Identities = 366/373 (98%)
 Strand = Plus / Minus

                                                                       
Query: 224 gcagaagctcagcatcccagagcgtgaatcttatcaaggctgtctttctctttcattcta 283
           |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 996 gcagaacctcagcatcccagagtgtgaatcttatcaaggctgtctttctctttcattcta 937

                                                                       
Query: 284 caatatacacaccttgaaaggaacacacagctctataaagacatctgtatggaacttgca 343
           ||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||
Sbjct: 936 caatatacacaccttgaaaggaacacatagctctataaagacatccatatggaacttgca 877

                                                                       
Query: 344 gggagcacatacctattaaggaagatcaataaagaaacacagctgcctttctttagaggt 403
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 876 gggagcacatacctattaaggaagatcaataaagaaacacaactgcctttctttagaggt 817

                                                                       
Query: 404 tagtttgatcacataatcaaactactacataatttgacattcatgctatctttaagtaaa 463
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 tagtttgatcacataatcaaactactacataatttgacattcatgctatctttaagtaaa 757

                                                                       
Query: 464 aagaagtttgtatgcaataagtgttattggctgtacctagacagtttagtctcagtcagt 523
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 aagaagtttgtatgcaataagtgttattggctgtacctagacagtttagtctcagtcagt 697

                                                                       
Query: 524 ccccagagctgtctctgtactcaaagtcatatacaccacctatcttgttgatcttgatcg 583
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 ccccagagctgtctctgtgctcaaagtcatatacaccacctatcttgttgatcttgatcg 637

                        
Query: 584 tcaccttcttctt 596
           |||||||||||||
Sbjct: 636 tcaccttcttctt 624


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space:   577796
Effective search space used:   577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no088_o12.g1 MSMg01no088_o12.g1 CHROMAT_FILE:
MSMg01no088_o12.g1 PHD_FILE: MSMg01no088_o12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:32 2005
         (284 letters)



>mm_chr14_18207120_18207803
          Length = 684

 Score =  495 bits (256), Expect = e-144
 Identities = 277/284 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgaaactaccaggaggtagggcctgattagtttaagtaattaacctaggaagagctct 60
           ||||||||||||||||||||||||||| ||||||||||||| |||  |||||||||||||
Sbjct: 201 catgaaactaccaggaggtagggcctggttagtttaagtaagtaatttaggaagagctct 260

                                                                       
Query: 61  gaaggcaatatctaccccagctctggtctatctctagacttcctgtgtgcaccatgaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaggcaatatctaccccagctctggtctatctctagacttcctgtgtgcaccatgaaaa 320

                                                                       
Query: 121 caaggacccagccttcctgttctgacactagagatggagtgacttctgcagccatgcctt 180
           ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 321 caaggacccagccttcctgttctgacactagagatagagcgacttctgcagccatgcctt 380

                                                                       
Query: 181 ccctggccaatgaacagaagccctacgtgacctcaaaccagacaaactttcctctcttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccctggccaatgaacagaagccctacgtgacctcaaaccagacaaactttcctctcttaa 440

                                                       
Query: 241 gtatctacactcaggtatttggtgacagagatgagatgtgaaaa 284
           ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtagctacactcaggtatttggtgacagagatgagatgtgaaaa 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)