BAC Information

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BAC

Clone NameMSMg01-090C24
Chromosome14 (Build37)
Map Location 14,562,989 - 14,663,046
singlet/doubletdoublet
Overlap geneEG382844, LOC100042045, Gm281
Upstream geneCadps, EG432822, LOC100042022, LOC100042026, EG328354, Synpr, A430083B19Rik
Downstream geneThoc7, Atxn7, Psmd6, Olfr720, LOC667125, LOC100042543, Olfr31, Il3ra, LOC627139, Olfr721-ps1, LOC667152, LOC100042147, Slc4a7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090C24.T7 (MSMg01no090_c24.b1)MSMg01-090C24.TJ (MSMg01no090_c24.g1)
ACCAG308484AG308485
length720736
length of high quality
(start - end)
196 (126 - 321)165 (74 - 238)
definitionCHROMAT_FILE: MSMg01no090_c24.b1 PHD_FILE: MSMg01no090_c24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:16 2005CHROMAT_FILE: MSMg01no090_c24.g1 PHD_FILE: MSMg01no090_c24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,662,851 - 14,663,046)(14,562,989 - 14,563,153)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCTCTTGATTTCCCAATAAGACCTTTTCACGAGGCTCATACTGCTGCTGC
TCATCTGAAAAAGGGAGAGCGCAGATAGCAGCAAACACATAGCTAATAAA
CTATGAAGACTGTTTGGTATTATACCCACTGCTAAATGATAAGCTCCACG
AAGAAAGGAGAAATGCTCATCTTGTTTACAATAATGTCATCTACAAGGCC
CTGGGTTTGTCTACAAGGACTTTACTTCTTAAGGACATTATTTGTACTGC
GGATTGTCTAGCTCAATAGGTATTAGCCTAGACTAAGTTGAATGTGACAA
TCAAATAAAGGAATAGGAAAAAAATCAGGCAGAATATACAGATAGTAGCT
TTAATATTTGTTGGATACATGTGGAGGTTAGACAATTTTTCTTTTTGTGA
TAGCATCTTTTGTAGCCAGGTTGGCCTTGAACTCTTCATGTACACAAGGA
TGGCTTTGATTCTCTTGCCTCTCCTGTCCATGTGCTGATATTTTAGGGTT
AATCGAAACATTCCTAATTTAAAAACATTTTCCCCTTAAAATTATATCTT
ATTTTATTTTAACTTCATTTATAACAATTTTATATATGGACATCTTAATC
GCACCTATATCTTATTTTAATTACCCTTTCTGGCTTTTGCCTTTATTTTT
ATGTTTTTTGCTTACCTTTG
CGATGCTAGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTTCACTACATTCATTTTCTTTTACA
GAAGAAGCTTACAATTTTTGTCTACTTTTGAATATTTTGTCTGAGGATGT
CTAGCTAGTAACAGTGCGCCCCCAAGATGGGGAAAGCCTTTTGAATTCTC
TGGTTCTAGTTTCTATATTTGTTTATGCATATCTTTGGCCAAACTGGAGT
ATACAGGGTAGGAAGTTCTATGGGGCTCAAGGTACTCTCTCTCAGTTTGA
CATCCTTACTGAAAGGAAATTATTCTGTTATTCTTGAAATGTATGTTAAA
TAGTCCAAAGAGTTTTTTGTCCCCCCCCACCCCTCGTATCTGAGAACTTA
GTATATTAAACCAGGACATGCCCGGAAAAAAAACATTGCCTCCCTAGCTC
CCACCCCTCTGAACTATATTATATGTTACAGGCTGTTGATGATTAAATGG
ACCAATCATTGAGAAATGCGCCTATTCCACCCCTAGACTATCTTCCTTTT
TCTATAAATACTCCTATCTTTCATGCCTTGTGAAAAAACCCACTGTTCTC
TCTGTAGTGGGAGATTCGATTCCGTCCCGCTAATTCCGACTATAATAAAA
TCTCTCTGTTAATACTATAAATAGGCTGTGTTCCTATACTATTATCATTA
TATGCACCCCAATTCGCCCTTTGTATTGTCTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_c24.b1 MSMg01no090_c24.b1 CHROMAT_FILE:
MSMg01no090_c24.b1 PHD_FILE: MSMg01no090_c24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:16 2005
         (196 letters)



>mm_chr14_14662651_14663246
          Length = 596

 Score =  348 bits (180), Expect = e-100
 Identities = 192/196 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagcagcaaacacatagctaataaactatgaagactgtttggtattatacccactgctaa 60
           |||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 396 tagcagaaaacacatagctaataaactatgaagactgtttggtgttatacctactgctaa 337

                                                                       
Query: 61  atgataagctccacgaagaaaggagaaatgctcatcttgtttacaataatgtcatctaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 atgataagctccacgaagaaaggagaaatgctcatcttgtttacaataatgtcatctaca 277

                                                                       
Query: 121 aggccctgggtttgtctacaaggactttacttcttaaggacattatttgtactgcggatt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 276 aggccctgggtttgtctacaaggactttacttcttaaggacattatttgtactgtggatt 217

                           
Query: 181 gtctagctcaataggt 196
           ||||||||||||||||
Sbjct: 216 gtctagctcaataggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 596
Length adjustment: 8
Effective length of query: 188
Effective length of database: 588
Effective search space:   110544
Effective search space used:   110544
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no090_c24.g1 MSMg01no090_c24.g1 CHROMAT_FILE:
MSMg01no090_c24.g1 PHD_FILE: MSMg01no090_c24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:16 2005
         (165 letters)



>mm_chr14_14562789_14563353
          Length = 565

 Score =  288 bits (149), Expect = 1e-82
 Identities = 161/165 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttcactacattcattttcttttacagaagaagcttacaatttttgtctacttttgaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 201 acttcactacattcattttcttttacagaagaagcttacaatttttgtcaaattttgaat 260

                                                                       
Query: 61  attttgtctgaggatgtctagctagtaacagtgcgcccccaagatggggaaagccttttg 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attttgtctgaggaggtctagctagtaacagtgcgcccccaagatggggaaagccttttg 320

                                                        
Query: 121 aattctctggttctagtttctatatttgtttatgcatatctttgg 165
           |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 aattctctgggtctagtttctatatttgtttatgcatatctttgg 365


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 565
Length adjustment: 8
Effective length of query: 157
Effective length of database: 557
Effective search space:    87449
Effective search space used:    87449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)