BAC Information

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BAC

Clone NameMSMg01-090F21
Chromosome14 (Build37)
Map Location 85,320,213 - 85,320,501
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043280, LOC100043285, Pcdh17, 9630013A20Rik, LOC629794
Downstream geneLOC668603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090F21.T7 (MSMg01no090_f21.b1)MSMg01-090F21.TJ (MSMg01no090_f21.g1)
ACCAG308617AG308618
length723720
length of high quality
(start - end)
288 (76 - 363)549 (76 - 624)
definitionCHROMAT_FILE: MSMg01no090_f21.b1 PHD_FILE: MSMg01no090_f21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:30 2005CHROMAT_FILE: MSMg01no090_f21.g1 PHD_FILE: MSMg01no090_f21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATGCGC
GGAATTCTCTTATTTTTCCAACATCTGACTTTATGTTGTACAGGAAAAAT
ACATAAGAAAATGGGGAGAATTTATTATGAATACTGTTTTTGAGGTTTCT
ACTCATGATCAGAAGACTCTGTTGACATGGACTATGATGAGAAATGCTTT
CACAGAAGCAGGAGGGTGATGCAGCACAAAGTTGCTCAATCCACAGATTC
CAGGAAGTAGAAAAAGGGGGGGAAATGGCAAAATATAATAAATTTCAAAA
GACGATGTCTACAGTGAACTTTTTTTTGGTCATACCTTGTAAAATTTGAA
AAACTACATAATTTTTTTTCTCCCCCCCCCCCACTCAATTAATTGGATCA
AAGCCCTCACAGACCATTTAGCCCTCAATAACTCTATGTATCAGCTAAAG
GTTAAACTATTAGCATATAAGCTGTTGGGCGAAATTCTTTTATATCAAAG
TTGTAATATCTATGTTACACTTTTTTCTTACTTTGATGTATAACTTCCTA
AGTTTCATGGGAAAAACTTATAAACTCATAATTTGCTAATTAACTGCCTT
CCACTGAAACAATATTAATTTTCTTTGATACAACATTTCCTTTTCTCAAC
AGTATTGCTTTTTGTTGATTATTCATAATTATCAACTTTCTTCCCTCAGT
CTTCCAACTTTAATCGCACTATT
NCTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGATGGGAGAAACTAGGTGGTGAGA
CACTTGGAGTATTTAGGAGGAGAAAATGAAATCAGAAATCTCATATATCA
ACTATTTTCTTTTTAATTTTATTTTCAAAATATTATCTTTATATTCACTT
TCAGAGAAAGAAAATCTTAGAATATTTTTACAATAAAGTTAACATTGATA
TTTTACCCCTGAATTCTAGTGTTATTTTTCTCTTTAAAAATTTCAGTGGT
TCTTTGTGAATTGCACATCATGCACCTCCCATGTTGCACTCTTTCCACCT
CCTCCCCAAAAAAGGAAAAAGAAATAAAACAAACAAACAAACAAAAAACC
CTTATCATGGAATCTTCACTGTGTCACACTGTGTCCCATACTTTTCCTTT
TGTTCCCACTCTGCTTTCCTTGCAAATGTTCATTGCAAACAGTGTTTGGT
CTGATTCAAAGTCTCTGGCTTCTGCTACAGTATCATTTGTGAAACCTCAC
TGAAATGCCTCTCAAATATCTTGTTGTTGCCCTTTTTCACAGAGATTCTG
TAGTTTTGGACCAGTAGGCAGGCCCCTTTACATGCTCCAGCAGTTCACCA
ATGGGGTAGGTATTGGAGTGGACCTGAGCCTGAGCTGGATCTGAGCTTGT
TTGCTCACCAGTTGTCCTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_f21.b1 MSMg01no090_f21.b1 CHROMAT_FILE:
MSMg01no090_f21.b1 PHD_FILE: MSMg01no090_f21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:30 2005
         (288 letters)



>mm_chr14_85320013_85320700
          Length = 688

 Score =  503 bits (260), Expect = e-147
 Identities = 281/294 (95%), Gaps = 12/294 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgactttatgttgtacaggaaaaatacataagaaaatggggagaatttattatgaatact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgactttatgttgtacaggaaaaatacataagaaaatggggagaatttattatgaatact 260

                                                                       
Query: 61  gtttttgaggtttctactcatgatcagaagactctgttgacatggactatgatgagaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttttgaggtttctactcatgatcagaagactctgttgacatggactatgatgagaaat 320

                                                                       
Query: 121 gctttcacagaagcaggagggtgatgcagcacaaagttgctcaatccacagattccagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctttcacagaagcaggagggtgatgcagcacaaagttgctcaatccacagattccagga 380

                                                                       
Query: 181 agtagaaaaagggggggaaatggcaaaatataataaatttcaaaagacgatgtctacagt 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 agtagaaaaagggggggaaatggcaaaatataataaatctcaaaagacgatgtctacagt 440

                                                                 
Query: 241 gaactt-----ttttttggtcataccttgtaaaatttgaaaaact--acataat 287
           ||||||     |     ||||||||||||||||||||||||||||  |||||||
Sbjct: 441 gaacttaaacct-----ggtcataccttgtaaaatttgaaaaactttacataat 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)