XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAGCCAGTTATCTCGGTCGGTGATGCTTCTGTCTCTACCTCCTCAGCCTT
GAGGTTACAGGTCTTTATATCATCCTGTGTGCTGCATTTTATGTGGCCTT
TGTGGTTCCAAACTAAAGGCCTTGGGTTTGTGACATAATATTTTAACAAT
TAATCAACCACCCAGTCCTAATATATACCTATTTTTTCTACATGCATTGC
TCATAATAATTGATATTTTACAACTAATGCGGAGGCTTAAGTTTTCATGT
AGGATCTATACTTGAAGTCATTCTGTACAGACTGTGCAGTAGGAAGACCA
TTTTGGGTTTTAGTAGGTTGGGGGAGATAGAAATTATTCTCAAAGTGCAT
CTGCCCCCAAATTTTACCAATTTATTCTAATATTTGAAAACTGTTTAAGG
AGAAAACCCTAGTGTATAACTCTAAGAACACAATGGACTTAGATGGATGA
ATTATCAGTGTTCAATAGAAAGGACAAGGAGAATAGGAACACAAAGTCTA
GACGTTGAAAGTTTAGATATTCATTTCTGTCATACGATTTCCTCATTTTA
AATCACAGAACCACTGTGATGGACAGGCCCTTTTATCCAGGGTTGACAGC
ATCCCATGAGCCCAATAGAGCTTTTGAGTGAACATTGGCAAACTTCAC

TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCACTACACTGGGACATCTAGCCTTC
ACAGGACCAAAGTCATCTCCTCCCATTGATAACTAACAAGGCCATCCTCT
GCTACATATATGGCTAGAGCCATGGGTCCCTCCATGTGTACATTTTTGTG
GTTTAGTACCTAGGAGCTCTGCGGGTTCTGCTTGGTTCACATTGTTGTTC
CTCCTATGGGGCAGCAAACCCCTTCAGCTCGTATAAAGGAAAACATTTAA
TTGGGGCTGGCTTATAGTTTTAGAGGTTCAGCCCATTATCATCATGGCAG
GAAGCAGAGAGTGTGCATGTTAACATGGCGCTGGAAGAGCCCTGTGTTCC
ACATTTTGTTCTGCTGGCAGCACCAGAGGATTGGATGTGTTTCACACTGG
GCAGAGCTTGAGCATATATAAGACCTCAAATCCTAGTCTCCACAGTGATA
CTTTCTCTAACAAGTCCACACCTCTTCCAATAAGGCCACACATAGCCATT
TTAATCTCTAACTAAATATATCATTACAGAATAAAGTCTAAGAAATTGCG
TTCAACAATTTCTGGTGTAATTTACCCATGGTATTTTTATGAATAAATGC
TGGGAAACCTGCCTTTGTGAGGTGAAACCTTTAGATATATTCCTGAAAC

Query= MSMg01no090_f22.b1 MSMg01no090_f22.b1 CHROMAT_FILE:
MSMg01no090_f22.b1 PHD_FILE: MSMg01no090_f22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:30 2005
         (540 letters)



>mm_chr14_39912774_39913713
          Length = 940

 Score =  915 bits (473), Expect = 0.0
 Identities = 524/547 (95%), Gaps = 13/547 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagccagttatctcggtcggtga----------tgcttctgtctctacctcctca 54
           ||||||||||||||| || |||||||||          ||||||||||||||||||||||
Sbjct: 196 gaattcagccagttagct-ggtcggtgagcccaacagatgcttctgtctctacctcctca 254

                                                                       
Query: 55  gccttgaggttacaggtctttatatcatcctgtgtgctgcattttatgtggcctttgtgg 114
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gccttgaggttacaggtctttatatcatcctgtgtgctgcattttatgtggcctttgtgg 314

                                                                       
Query: 115 ttccaaactaaaggccttgggtttgtgacataatattttaacaattaatcaaccacccag 174
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ttccaaactgaaggccttgggtttgtgacataatattttaacaattaatcaaccacccag 374

                                                                       
Query: 175 tcctaatatatacctattttttctacatgcattgctcataataattgatattttacaact 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 375 tcctaatatatacctattttttctacatgcattgctcataataattgatattttacaacg 434

                                                                       
Query: 235 aatgcggaggcttaagttttcatgtaggatctatacttgaagtcattctgtacagactgt 294
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aatgcggaagcttaagttttcatgtaggatctatacttgaagtcattctgtacagactgt 494

                                                                       
Query: 295 gcagtaggaagaccattttgggttttagtaggttgggggagatagaaattattctcaaag 354
           |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 495 gcagtaggaagacc-ttttgggttttagtaggttgggtgagatagaaattattctcaaag 553

                                                                       
Query: 355 tgcatctgcccccaaattttaccaatttattctaatatttgaaaactgtttaaggagaaa 414
           ||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||
Sbjct: 554 tgcatctgcccccaaatattaccaatttattctaatatttgagaagtgtttaaggagaaa 613

                                                                       
Query: 415 accctagtgtataactctaagaacacaatggacttagatggatgaattatcagtgttcaa 474
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 accctagtgtatagctctaagaacacaatggacttagatggatgaattatcagtgttcaa 673

                                                                       
Query: 475 tagaaaggacaaggagaata-ggaacacaaagtctagacgttgaaagtttagatattcat 533
           |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tagaaaggacaaggagaaaaaggaacacaaagtctagacgttgaaagtttagatattcat 733

                  
Query: 534 ttctgtc 540
           |||||||
Sbjct: 734 ttctgtc 740


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)