BAC Information

Click to search

BAC

Clone NameMSMg01-090J15
Chromosome14 (Build37)
Map Location 100,475,289 - 100,517,642
singlet/doubletdoublet
Overlap geneKlf12
Upstream geneDis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671, LOC668672, EG546623
Downstream geneLOC100043413, EG668683, EG668684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090J15.T7 (MSMg01no090_j15.b1)MSMg01-090J15.TJ (MSMg01no090_j15.g1)
ACCAG308789AG308790
length723712
length of high quality
(start - end)		419 (44 - 462)434 (72 - 505)
definitionCHROMAT_FILE: MSMg01no090_j15.b1 PHD_FILE: MSMg01no090_j15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:48 2005CHROMAT_FILE: MSMg01no090_j15.g1 PHD_FILE: MSMg01no090_j15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,475,289 - 100,475,703)(100,517,209 - 100,517,642)
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCATACAATATATCTTGATCAAATTCATTCTCACTCCCCCAGCTCCTT
TCAGATCTTCTCTATCTCCCTCCTTACCTGACTTTATTATCTCCTTGTCC
CTCTCTTCCCTAGACTTTGGGACATGCCCTAGGCTATTTTAGAAATATCA
TGTGCCACTCCATTGAAGAAAGCTGGCTTCCCCTCTCCCAGAAGCAATCA
AGTGTCAATAGCTCCTTGGCCAAAGTGGGACTTCATGCTTGCTTCCCATC
CTCCACTCTGGGATTTTGTCTGGTTTGAGCTTGTACAGGTCTTTGTGCAT
ACTGTCACAGTTTCAAGGGTGCATTTTTATCCACTAAATGCCTTGGGGAA
ATTTCTTTCTCACTATCTTAGAGCCCTTTTCCCACCACTCTCAATGAATG
ATTGCTAAAACACTGTTCATATTGTGTTGACCATAGGAGACCTGTTTTCC
TCTCTTATAATTGTGAACAGCACAAGTATTTTTATTAAGCCATAGATTCC
TTAGCTTTGGATGGAAGAAAGGGAACATGGCCCCTTGTATGCTGTGCTTT
ATTTCCTCTCCTTCTTAGGCCGCGGGTGAAGCCAATGTCGTGGCTCATAT
AAATCATGGTATGTATGATTCTGTTTTAGGAGAAATTCTTGATTTTGCGA
TTCATGGTGTCACTATGTTTAGC

AATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCATTGGCCATTTCTAAGGCTAGAACTCC
TAGTTGCCATTTCTAATCCTGGATCCTTACAGGACCCTTCCATCTCCCAA
TGCTTGGACTTACTTGCACACTGATAGCCCCATTCTGGAATCTTTGAGCT
TGCTTTATGGGAAAACTTTGGATATGCATAAAGGGTGGAGGGAAATGTTC
TAAATTAATAGCAGATGTATTTTGAAGTTGGCTACAAATATTCCTTATAT
GGAGTATTGTTGTCTTTTAATATTGAGGTACCATTTGTACTTTTTAATTG
ATGACTATGAGGTAGTATAAAGTTAAGATTTGGCACAGAAGATGTGGTTC
CACATTTAAGAGTCCTTCCCATCCTTCCAGAGGACTGAGCTCAGCCCCAT
GCTAGTCAGTAACTCTAGCTCCATGGGAGCTTGGGGCCTCTTATGGACTC
TAGGAATCTGATACATATGTAAAGCGAGAGAGACAGGGTAGAGGGAGACA
AAGAGGTGCATGCATACATGTCCCCGTACCCCCATGCATAACTATATAAT
TGGAAAATATAATGTTTTAAAGAATGTGCCTAGAAAAGATAATCATATGA
CAGAATTCTTTAGGAAAGTGTTCAAAAAATATGTCTTTATTGAAAGTGAA
ATTGCGATAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_j15.b1 MSMg01no090_j15.b1 CHROMAT_FILE:
MSMg01no090_j15.b1 PHD_FILE: MSMg01no090_j15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:48 2005
         (419 letters)



>mm_chr14_100475085_100475903
          Length = 819

 Score =  764 bits (395), Expect = 0.0
 Identities = 410/415 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatacaatatatcttgatcaaattcattctcactcccccagctcctttcagatc 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatacaatatattttgatcaaattcattctcactcccccagctcctttcagatc 264

                                                                       
Query: 65  ttctctatctccctccttacctgactttattatctccttgtccctctcttccctagactt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttctctatctccctccttacctgactttattatctccttgtccctctcttccctagactt 324

                                                                       
Query: 125 tgggacatgccctaggctattttagaaatatcatgtgccactccattgaagaaagctggc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgggacatgccctaggctattttagaaatatcatgtgccactccattgaagaaagctggc 384

                                                                       
Query: 185 ttcccctctcccagaagcaatcaagtgtcaatagctccttggccaaagtgggacttcatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttcccctctcccagaagcaatcaagtgtcaatagctccttggccaaagtgggacttcatg 444

                                                                       
Query: 245 cttgcttcccatcctccactctgggattttgtctggtttgagcttgtacaggtctttgtg 304
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 445 cttgcttcccatcctccactctgggattttgtctggcttgagcttgtacaggtctttgtg 504

                                                                       
Query: 305 catactgtcacagtttcaagggtgcatttttatccactaaatgccttggggaaatttctt 364
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 505 catactgtcacagtttcaagggtgcatttttaaccactaaatgccttggggaaatttctt 564

                                                                  
Query: 365 tctcactatcttagagcccttttcccaccactctcaatgaatgattgctaaaaca 419
           |||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 565 tctcactatcttagtgcccttttcccaccactctcaatgaatgatcgctaaaaca 619


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no090_j15.g1 MSMg01no090_j15.g1 CHROMAT_FILE:
MSMg01no090_j15.g1 PHD_FILE: MSMg01no090_j15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:48 2005
         (434 letters)



>mm_chr14_100517009_100517842
          Length = 834

 Score =  808 bits (418), Expect = 0.0
 Identities = 430/434 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcattggccatttctaaggctagaactcctagttgccatttctaatcctggatccttaca 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 tcattgaccatttctaaggctagaactcctagttgccatttctaatcctggatccttaca 575

                                                                       
Query: 61  ggacccttccatctcccaatgcttggacttacttgcacactgatagccccattctggaat 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ggacccttccatctcccaaggcttggacttacttgcacactgatagccccattctggaat 515

                                                                       
Query: 121 ctttgagcttgctttatgggaaaactttggatatgcataaagggtggagggaaatgttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ctttgagcttgctttatgggaaaactttggatatgcataaagggtggagggaaatgttct 455

                                                                       
Query: 181 aaattaatagcagatgtattttgaagttggctacaaatattccttatatggagtattgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 454 aaattaatagcagatgtattttgaagttggctacaaatattccttatatggagtattatt 395

                                                                       
Query: 241 gtcttttaatattgaggtaccatttgtactttttaattgatgactatgaggtagtataaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gtcttttaatattgaggtaccatttgtactttttaattgatgactatgaggtagtataaa 335

                                                                       
Query: 301 gttaagatttggcacagaagatgtggttccacatttaagagtccttcccatccttccaga 360
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 334 gttaagatttggcacagaagatgtggttccgcatttaagagtccttcccatccttccaga 275

                                                                       
Query: 361 ggactgagctcagccccatgctagtcagtaactctagctccatgggagcttggggcctct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ggactgagctcagccccatgctagtcagtaactctagctccatgggagcttggggcctct 215

                         
Query: 421 tatggactctagga 434
           ||||||||||||||
Sbjct: 214 tatggactctagga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space:   350625
Effective search space used:   350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |