BAC Information

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BAC

Clone NameMSMg01-091A14
Chromosome14 (Build37)
Map Location 113,812,753 - 113,812,982
singlet/doubletsinglet
Overlap genenone
Upstream geneEG223186, LOC100043509, Tpm3-rs7
Downstream geneLOC100043510, LOC382947, LOC668791
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091A14.T7 (MSMg01no091_a14.b1)MSMg01-091A14.TJ (MSMg01no091_a14.g1)
ACCAG309098AG309099
length708704
length of high quality
(start - end)
229 (123 - 351)230 (131 - 360)
definitionCHROMAT_FILE: MSMg01no091_a14.b1 PHD_FILE: MSMg01no091_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:24 2005CHROMAT_FILE: MSMg01no091_a14.g1 PHD_FILE: MSMg01no091_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTCA
CATTGGTAGGTTTTGAAGAATCTGAAAGAATAATAGATTCCAGAAAGATA
GAAATAGGTTTACCCAGAAATTGTAGATTCACAACCAAATTATACTGGAT
TGAATTTAGTTCCACGATATTCATTCACTGCTCAACCCTAGGCTTAAAGC
TCCTCGCAGGTCAATCCTATCCAAGGAATTTTAAATAGACCACTCCTATC
TATTCATAACAAATCAAAGCTAAGAATGTCATCAGATGTCACATCAGACC
TCTATCAAAATTGCGCTTCCTTTCTGAAGCCTCTCACTTGTAGTTTCTGC
ATATATGGCCCAATATACTCATTATGTATCCCCGCTTGTTCTGTTACTAA
TTTAAATGACAGAAAATTTTTCAGTGATGGAGAATGTTACTAGGTAAAAC
CAAATTTGTTTTCATAAGATATAGTCACTCATATTTGACTCAAAAATAAA
TGATTGTACCCTTGAATGGCGAGAACTCTCTTTTTCATCAACCCAAAATA
GCTCCTTCCTAAAATTAATAATGATCAAGTCAACAAAGAATACACTACTT
CTCTGGCGTAAATTACAAGTAAAACTTTCCTAGAGTCCAGGAGTATACAG
AGTCTCACAGCCCCCTGTTTCGCCTTTCTTCCTCTGTTCTCATGCTGGTG
CCGATGAC
TTCACAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGGCACAGGGTGAAATTTCC
TAAACAAAACTCCAATGTTTCCTCATCTAAGATCAAGAATTGGTAAATGG
GGACTCATAAAACTGGAAAGCATCTGTAAGGCAAAGGACATAGTCAATAA
GATAAATTGGCAACCTACTGATTGGAAAATAATCTTCAATAACCCCACAT
CTGATAGAGAACTAATATCCAAAATATATAAAGAACCCAAGATGTTAACC
ATCAAACAACCAAACAACCCAATCAAAAAATGGGGTGTAGAACTAAACTG
AGAATTCACAACTGAGGAATCTCGAATGGATGTGAAACAACTAAAGAAAT
ATTCAAAGTTCTTAGTGATCAGAGAAATGCAAATCTAAACAACCCTGAGA
TTCCATCTTACACCAATCAGAAAGGCTAAGATCAAAACCTCAGGTGACAA
CACATGTTGGAGAGGATGTGGGGAAAAAGGAAACTCTTCCATTGCTGATG
CGATTGCAAATTGGAACAACCACTCTATAAATCATTCTGGAGGTTCCTCA
GAGAACTGGATATAGATCTACCTGAAGACATAGCTATACCACTCTTGGGA
ATGTACACAAAAGATGCCCCACCATGCCACATGGGCATGTGTTCCACTAT
GTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_a14.b1 MSMg01no091_a14.b1 CHROMAT_FILE:
MSMg01no091_a14.b1 PHD_FILE: MSMg01no091_a14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:24 2005
         (229 letters)



>mm_chr14_113812553_113813182
          Length = 630

 Score =  422 bits (218), Expect = e-122
 Identities = 227/230 (98%), Gaps = 1/230 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtagattcacaaccaaattatactggattgaatttagttccacgatattcattcactgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gtagattcacaaccaaattatactggattgaatttagttccacgatattcattcactgct 371

                                                                       
Query: 61  caaccctaggcttaaagctcctcgcaggtcaatcctatccaaggaattttaaatagacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 caaccctaggcttaaagctcctcgcaggtcaatcctatccaaggaattttaaatagacca 311

                                                                       
Query: 121 ctc-ctatctattcataacaaatcaaagctaagaatgtcatcagatgtcacatcagacct 179
           |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ctctttatctattcataacaaatcaaagctaagaatgtcatcagatgtcacatcagacct 251

                                                             
Query: 180 ctatcaaaattgcgcttcctttctgaagcctctcacttgtagtttctgca 229
           |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 250 ctatcaaaattgtgcttcctttctgaagcctctcacttgtagtttctgca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 630
Length adjustment: 9
Effective length of query: 220
Effective length of database: 621
Effective search space:   136620
Effective search space used:   136620
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)