BAC Information

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BAC

Clone NameMSMg01-091E17
Chromosome14 (Build37)
Map Location 37,172,600 - 37,173,024
singlet/doubletsinglet
Overlap genenone
Upstream geneGrid1, 4930596D02Rik, LOC100040277, LOC665933, 4930474N05Rik
Downstream geneGcap14, LOC100040341, LOC670331, Rgr, Lrrc21, Lrrc22, Pcdh21, 2610528A11Rik, Ghitm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091E17.T7 (MSMg01no091_e17.b1)MSMg01-091E17.TJ (MSMg01no091_e17.g1)
ACCAG309285AG309286
length683680
length of high quality
(start - end)
538 (45 - 582)425 (127 - 551)
definitionCHROMAT_FILE: MSMg01no091_e17.b1 PHD_FILE: MSMg01no091_e17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:45 2005CHROMAT_FILE: MSMg01no091_e17.g1 PHD_FILE: MSMg01no091_e17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACACCATACACAAATTTNTGGGGACACAAAAAGCAGTTCTAAATGT
CAAATTTATAATACTAAGTTCCCACCTTTAAAAAAAGAAAAAAGGAGAAA
TCTCATTCTATCAAAGTCATAGCACACTGAAAGCTCTCAAATAAAATCTA
AAAATAAAAAATAAAAATATCACCCAAAAAGGTATAGATAGCAAGAAGTA
ATGAAGCTTATAGTGGAAATCAATAAAATAGTTAAGAAGGAGAATAATAC
AAAACAAATCAATGAAAAAATGTTAGTTTTTTGAGAAAATCAACTAAGAT
TGACAAACCCTTATTTAAATTAACTAACAAGAGGAAAGAGAATATCCAAA
TTTGCAAAATCAGAATCAAGGCTGCTGTTTTAGTTTGGATAAAAAGTGGT
CCCCAAAGACCCATAAAGAGTGGCAGTCTGAGGATGTATGTCCTTGTTGG
TGGAGATGTGAGCAGAATGAAGTGTGTCTCAGTCTATTTCTACTGTCTGC
CAGTCTAGACATAGATCTCCCAGCTCCTTCTCCAGTACTATGTCTGTCTG
TACACTGGCATACTTCCTGCCATGATGATAATGCACTAAACTTCTGAATT
TGAATGCAGCCTCAATGAAATGTTCTCCTTAAA
CCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTATTATTCTTTATTATTCTTCAC
AGAGTGGGGGAAGGGGGACTTGATCAAAAGCCAAAGGGCTTGGCAAACTT
CAAATAATTACTGTTTCACCACAAACATATTGTTTTACAGAAGCTGTTTT
GTGATTTAAGAAATAATATTATGAACAAGATGATTGGTATATTCCAGGTT
TGTTAATGCCATGTTTAAATTTGGGAGAGTAGCATTTGTTTCTCTACTGT
AAAAGCCAAAGAAATTATCTTGCCTACAAATTTTCCAAATAGCTTCTGCA
ATTCTGCATCCTAAAACCAGAGTCCCTCTGAAATAGCTCCTAACACTTGA
TTCTCTTTAAAGACATTCTTTTTCACACATAGTCACCCTGGAGTTCTTCA
TAGGCAAACCTTACTGTCATTTTATTTTTCCCACAGTTCCTCAGTTTCTT
AATTCGTAGAGCTGATTGGGGTTTAAGATTTGTCCAGATTTTTTTCTTTT
AAAAATTAGCTTATAGCCAGGCATGGTGGTGCATGCCTTTAAGTCCAATC
AAGCACTTGGGAGGCAGAGGCCAGTGGATCTCTGTGAGTTCAAGACCAGC
CTGTTCTACAAAGTGAGTTCCAGGACAACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_e17.g1 MSMg01no091_e17.g1 CHROMAT_FILE:
MSMg01no091_e17.g1 PHD_FILE: MSMg01no091_e17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:45 2005
         (425 letters)



>mm_chr14_37172400_37173224
          Length = 825

 Score =  791 bits (409), Expect = 0.0
 Identities = 421/425 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagccaaagggcttggcaaacttcaaataattactgtttcaccacaaacatattgtttt 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 aaagccaaagggcttggcaaacttcaaataattactgtttcaccgcaaacatattgtttt 260

                                                                       
Query: 61  acagaagctgttttgtgatttaagaaataatattatgaacaagatgattggtatattcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagaagctgttttgtgatttaagaaataatattatgaacaagatgattggtatattcca 320

                                                                       
Query: 121 ggtttgttaatgccatgtttaaatttgggagagtagcatttgtttctctactgtaaaagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtttgttaatgccatgtttaaatttgggagagtagcatttgtttctctactgtaaaagc 380

                                                                       
Query: 181 caaagaaattatcttgcctacaaattttccaaatagcttctgcaattctgcatcctaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaagaaattatcttgcctacaaattttccaaatagcttctgcaattctgcatcctaaaa 440

                                                                       
Query: 241 ccagagtccctctgaaatagctcctaacacttgattctctttaaagacattctttttcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccagagtccctctgaaatagctcctaacacttgattctctttaaagacattctttttcac 500

                                                                       
Query: 301 acatagtcaccctggagttcttcataggcaaaccttactgtcattttatttttcccacag 360
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 501 acatagtcaccctggagttcttcataggcaaaccctactgtcattttatttttcccacag 560

                                                                       
Query: 361 ttcctcagtttcttaattcgtagagctgattggggtttaagatttgtccagatttttttc 420
           ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 561 ttcctcagtttcttaattcatagagctgattggggtttaagatttgtccatatttttttc 620

                
Query: 421 tttta 425
           |||||
Sbjct: 621 tttta 625


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space:   339456
Effective search space used:   339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)