BAC Information

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BAC

Clone NameMSMg01-091H21
Chromosome14 (Build37)
Map Location 80,920,543 - 80,920,934
singlet/doubletsinglet
Overlap genenone
Upstream geneElf1, LOC668560, Sugt1, Lect1, Pcdh8, EG629734, Olfm4, LOC672828
Downstream geneLOC639207
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091H21.T7 (MSMg01no091_h21.b1)MSMg01-091H21.TJ (MSMg01no091_h21.g1)
ACCAG309428AG309429
length715718
length of high quality
(start - end)
393 (47 - 439)501 (74 - 574)
definitionCHROMAT_FILE: MSMg01no091_h21.b1 PHD_FILE: MSMg01no091_h21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:01 2005CHROMAT_FILE: MSMg01no091_h21.g1 PHD_FILE: MSMg01no091_h21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAATTTGCGGCGCTATACGACTCCTATATTCAGAGATCCGCGGATTCAGC
AAGTAACACCATACTGTTTTAGTTTTTAATAGGCTATGCTAGCTACACTG
TTATAAATGGACTTAATACTATCTACAGAAGGTCAACTGATATATTGTTG
CAATAGTTTATAAGATTATTAAAACTAATACAAGATACTACCAGTGAGAA
ACAAAAACTAGAAATGACAAGATGGTGAGGAAACAATCACAGTAAAATTT
TATTTTCAATAGAGATCTTAGAATGACTACCAGGCATTAGGACTGCAGGG
TGGGTGGATGTTGGCACAGAAATATCAGATGTATCTCAGGCCAGCAGAAG
TTGGCCCAAATAACCCCTGCAAATACAGGAAGAATGTGTTTATAGCAAAA
GATAATAAGTTCACGTGCTGGGAGTATTAGCTTTATTGGCTAGCAGATGC
CTACTAGATATACAGCAGGAGCTTTCTAAAGTACATATTAAGAAGTGTGA
GATTCACAGGAAAAATGAGAAAGTCCAGAAGAGGGCTAAATTCTTATCTG
TGTAGTCCAAGCCATAAAATGTGATGTTTTCCTAGGCAGACTTTTGTCAG
ACATATGGTTTTGTCCTAAGGAGAAAACCCTAGCTCTATGCTCCATGGAC
ATCTCAAGCCACCATTGTACCTATTATATTCCTTTGAAATCGCATTCTTT
CTACAATATGGACTA
TCGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGATTCCCTGCATCATGTTGATTACTT
AAGAATCGTCCTGTGCATACATACAATGACAATGTGGTCCCATTGCCAAG
GACAAAACCCATACATTCCACTGAATATGGAGAAGTCAAGCTGTGTCTAC
ATGGAGCCTTCAACTCTATATTCTAGTCTCTCTATAGGCCAATGAAAGAA
AAATGTGGACACCAACCTACCCACAAAACCTTTGACCTAAAATCTGTCCT
GTCTGCATAATATACTAAGGCAATGGGGGCACAGAGTTTATGGGAGTAGC
CAACTGATGTCTGACTTGATCTAAGGGACACTGCAAGAGAAGAACCCATA
CCTGACACGGCTGGAGTAATCAAGAACCTGAGACTATATAGCTGAGAGAC
AGGTTAAGACCAAACACTACTGGTCATGAAAAAAGTATGAGTAAAATGAC
TCCTAATGATATTTTGCTATATCCATAGATAAGGGTCTTATCCAGTCATC
ACCAGAGAAGCTTCCTCCTGTACAGATATAGATGAGAACAGATACTGAGA
TCCATAGCCAAACATGAAATGGAGAGAGATTCTAAATGGCAGGCCTCCAT
CATATCCCTCCTCTCAGAGCTCAGGAAATCCTGCAGAGATTATAAAAGCC
AGACGGAATGGAGGATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_h21.b1 MSMg01no091_h21.b1 CHROMAT_FILE:
MSMg01no091_h21.b1 PHD_FILE: MSMg01no091_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:01 2005
         (393 letters)



>mm_chr14_80920343_80921134
          Length = 792

 Score =  729 bits (377), Expect = 0.0
 Identities = 389/393 (98%), Gaps = 1/393 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagcaagtaacaccatactgttttagtttttaataggctatgctagctacactgttataa 60
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 cagcaagtaacagaatactgttttagtttttaataggctatgctagctacactgttataa 533

                                                                       
Query: 61  atggacttaatactatctacagaaggtcaactgatatattgttgcaatagtttataagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 atggacttaatactatctacagaaggtcaactgatatattgttgcaatagtttataagat 473

                                                                       
Query: 121 tattaaaactaatacaagatactaccagtgagaaacaaaaactagaaatgacaagatggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 tattaaaactaatacaagatactaccagtgagaaacaaaaactagaaatgacaagatggt 413

                                                                       
Query: 181 gaggaaacaatcacagtaaaattttattttcaatagagatcttagaatgactaccaggca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gaggaaacaatcacagtaaaattttattttcaatagagatcttagaatgactaccaggca 353

                                                                       
Query: 241 ttaggactgcagggtgggtggatgttggcacagaaatatcagatgtatctcaggccagca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ttaggactgcagggtgggtggatgttggcacagaaatatcagatgtatctcaggccagca 293

                                                                       
Query: 301 gaagttggcccaaataacccctgcaaatacaggaagaatgtgtttatagcaaaagataat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 gaagttggcccaaataacccctgcaaatacaggaagaatgtgtttatagcaaaagataat 233

                                            
Query: 361 aagttcacgtgctgggagtattagctttattgg 393
           ||||||| ||| |||||||||||||||||||||
Sbjct: 232 aagttca-gtgttgggagtattagctttattgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 792
Length adjustment: 9
Effective length of query: 384
Effective length of database: 783
Effective search space:   300672
Effective search space used:   300672
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)