BAC Information

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BAC

Clone NameMSMg01-092C02
Chromosome14 (Build37)
Map Location 10,245,167 - 10,245,360
singlet/doubletsinglet
Overlap genenone
Upstream gene4930452B06Rik, LOC100041948
Downstream geneFhit, LOC100042415
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092C02.T7 (MSMg01no092_c02.b1)MSMg01-092C02.TJ (MSMg01no092_c02.g1)
ACCAG309893AG309894
length715727
length of high quality
(start - end)
199 (124 - 322)194 (72 - 265)
definitionCHROMAT_FILE: MSMg01no092_c02.b1 PHD_FILE: MSMg01no092_c02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:52 2005CHROMAT_FILE: MSMg01no092_c02.g1 PHD_FILE: MSMg01no092_c02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCAACTGATTCCATCAAATGGCTGAAAAGCACCTGAAAAAAAAAGTTCA
ACATCCTTAATCATTTTCGCCGAATTTTGTCAAGTGCTTTCTCAGAATCT
AATGAGATGATCATATGGTTTTTGTCTTTGAGTTTTTTTATACAGTGGAT
TATGTTGATTTCAGTATATTAAACCATCCCTGCATCCCTGTGATGAAGAC
AGATGACCATTTTGATGTGTTCTTGGATTCCGTTAGTGAGAATTTTATTG
AGTATTTTTGCATCTATATTCATTAGACAAATTGGCCTGAATTTCTCTTT
CTTTGTTGTTTCTTTATGTGCCTTACGTATCAAAGTAATTATGGCTTCAT
ACAATGAATTGCTTCTATTTTGCAAAATAATTTGAGGCCTCCATTATGTT
ATATGCCCTATTCCTTTCTTCCCTTCACCCCCTCCCCTGCCATCTCCCCC
TACTCTGTCTCCCCAATTTCTCACTTCTCTTACTTCAAATATTGCTGTTA
TTGTTCTCCTCTTCTCTCCTCCTCTTTCCTCTCTCATTTCCTCCTCTTCC
TTCTCCTTCATCCGCTCTTTATTAATCTACCCTCCTTTATTCCATAAAAC
ATCCTCTTTGTCAATCTTCCTTTCCCCCCCCTCTTCCCTTTCCCTTCTAC
CTGCTGCTTTCTTCT
TATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCTTTTATCTGTGTTCAATCTTTTTTTTA
AACTCTTAACTTTAGTACTTGTCAATATTTTATAATTTGGTTTTTAAAAT
TCCTTTTTTTCCCATCTTTTATTTTTCTGAAGAGGTTGCTTTCTGTTTTC
AGATTCATTTACTCCTTCTAGAGTAGTTACTATTTCTAAAATCACCATGA
TTTCTTCTTCCTTTGTAGGCATTAGCATTTACTTACTGTTTTCCAGATTG
CTTTCACATTACAAGTTCCAATTTTGACGTATGTTTTAAATAACTTTTGC
TTGATTTCATTCTCCTGTAATGAACACTCTCTTCTCATATTTTTTATGAG
TGCCTTGCATAGGGTTTAACTGGATATTTCTCTTTTCCTGACACTTGGAC
TTTGGCTAACAACTTTGGTTCATCAAAACGTTCTTTTCTTGCCACCATTT
TGTCTTTTTTTTTTTTTCTCCCTCCATAGTTTCTGTTTTCTCTTGAATTC
AATGTTTTATTCATATTAGACCCCTTCGGTCCTCAAGATCCCCCCCCCCC
CGTTTATCCTCCCCACCCCCGGTATTACTTCCCTCGCTACTGTTGGTTTC
TGGGTTTGCTACATGTTCCTCTACTTTCCCTATCCTCCTTGCATTGAGTA
GTATTTTTTCTGGCTCCCTTTCTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_c02.g1 MSMg01no092_c02.g1 CHROMAT_FILE:
MSMg01no092_c02.g1 PHD_FILE: MSMg01no092_c02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:53 2005
         (194 letters)



>mm_chr14_10244967_10245560
          Length = 594

 Score =  375 bits (194), Expect = e-109
 Identities = 194/194 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccttttatctgtgttcaatcttttttttaaactcttaactttagtacttgtcaatatttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ccttttatctgtgttcaatcttttttttaaactcttaactttagtacttgtcaatatttt 335

                                                                       
Query: 61  ataatttggtttttaaaattcctttttttcccatcttttatttttctgaagaggttgctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ataatttggtttttaaaattcctttttttcccatcttttatttttctgaagaggttgctt 275

                                                                       
Query: 121 tctgttttcagattcatttactccttctagagtagttactatttctaaaatcaccatgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tctgttttcagattcatttactccttctagagtagttactatttctaaaatcaccatgat 215

                         
Query: 181 ttcttcttcctttg 194
           ||||||||||||||
Sbjct: 214 ttcttcttcctttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)