Query= MSMg01no094_a11.b1 MSMg01no094_a11.b1 CHROMAT_FILE:
MSMg01no094_a11.b1 PHD_FILE: MSMg01no094_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:30 2005
(276 letters)
>mm_chr14_118045435_118046111
Length = 677
Score = 482 bits (249), Expect = e-140
Identities = 270/277 (97%), Gaps = 1/277 (0%)
Strand = Plus / Minus
Query: 1 gcgaa-gaggaacagggggtttctgcctccagtctcctcagtgactagggtaagagcttt 59
||||| ||||||||||| ||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 477 gcgaaggaggaacagggcgtttccgcctccagcctcctcagtgactagggtaagagcttt 418
Query: 60 aaggaggaccatttacagttgggcttttaggctctgactctgatggattaagactcacag 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 417 aaggaggaccatttacagttgggcttttaggctctgactctgatggattaagacccacag 358
Query: 120 aattaatttcatgcctcaaacaaggccttagacgaatgaagatttggtttggaagaggaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 aattaatttcatgcctcaaacaaggccttagacgaatgaagatttggtttggaagaggaa 298
Query: 180 tatagagaaatatatagatcagaaacatggatgtttcaatgaacgcttactggctaaagt 239
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 297 tatagagaaatatatagatcagaaacatggatgtttcaatgcacgcttactggctaaagt 238
Query: 240 gtgcggagcaaactctgaaggacatgctgctaagaat 276
||||||||||||||||||||||||||||||| |||||
Sbjct: 237 gtgcggagcaaactctgaaggacatgctgctgagaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 677
Length adjustment: 9
Effective length of query: 267
Effective length of database: 668
Effective search space: 178356
Effective search space used: 178356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no094_a11.g1 MSMg01no094_a11.g1 CHROMAT_FILE:
MSMg01no094_a11.g1 PHD_FILE: MSMg01no094_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:30 2005
(588 letters)
>mm_chr14_117994018_117995004
Length = 987
Score = 975 bits (504), Expect = 0.0
Identities = 563/588 (95%), Gaps = 12/588 (2%)
Strand = Plus / Plus
Query: 1 atttcctttgcagccaaagatggaagagcactttaagcagcaagtgagctattggaaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 atttcctttgcagccaaagatggaagagcactttaagcagcaagtgagctattggaaaag 261
Query: 61 tctgggcaggccagagggaggctggtcaatgtgattaagcaatctgtgattgctaattga 120
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 262 tctgggcaggccagagggaggctagtcaatgtgattaagcaatctgtgattgctaattgc 321
Query: 121 agttaagctcattgatgttagtctcttaccctcccacagagcctgaaaaaatgggaacct 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 322 agttaagctcattgatgttagtctcttaccctcccacagagcctgaaaaa-tgggaacct 380
Query: 181 atctctggtgttgattccttttaaaaggggaggctcccagaggattgaaaaagacattct 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atctctggtgttgattccttttaaaaggggaggctcccagaggattgaaaaagacattcc 440
Query: 241 taggttataagggtaagggtgcatgataattcagggctagagaacttgcttaacttctgt 300
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 taggttataagggttagggtgcatgataattcaggggtagagaacttgcttaacttctgt 500
Query: 301 agctccctaagtacaatatgaaacactgcagaaataaaataaaaataaagaaaactgagt 360
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 501 agatcccttagtacaatatgaaacactgcagaaataaaataaaaataaagaaaactaagt 560
Query: 361 ggtagatcctatgcttgaacaaaaaaaaaaataaggaaaaacaagtaaaaccagtgtgaa 420
|||| ||||||||| |||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 561 ggtaaatcctatgcctgaacaaaaaaaaaaa-aaggaaaaacaagtaaaatcagtgtgaa 619
Query: 421 caatgaagcaaaaatctaagatttacaagcaagctttacatttgaaaagctatatattaa 480
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 620 caatgaagcaaaaatctaagattcacaggcaagctttacatttgaaaagctatatattaa 679
Query: 481 taatttgtttagttgctactacaaaaaaaaaccctgacaaacaagacttaagaggaggaa 540
||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 680 taatttgtttagttgctactacaaaaaaaaacc-tgacaaacaagacttaagag------ 732
Query: 541 gagttgaaatctggcttcaatttcaagggatctggtccttcctgacag 588
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 ---ttgaaatctggcttcaatttcaagggatctggtccttcctgacag 777
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 987
Length adjustment: 10
Effective length of query: 578
Effective length of database: 977
Effective search space: 564706
Effective search space used: 564706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
