BAC Information

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BAC

Clone NameMSMg01-094B16
Chromosome14 (Build37)
Map Location 78,666,634 - 78,785,043
singlet/doubletdoublet
Overlap geneTnfsf11
Upstream geneD230005D02Rik, LOC676171, EG629678, Gm1587, Dnajc15, Epsti1, AU021034
Downstream geneLOC219180, Akap11, Dgkh, LOC673649, 1300010F03Rik, LOC629709, LOC100043765, AU017455, 1190002H23Rik, Narg1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094B16.T7 (MSMg01no094_b16.b1)MSMg01-094B16.TJ (MSMg01no094_b16.g1)
ACCAG311367AG311368
length687708
length of high quality
(start - end)		560 (44 - 603)338 (72 - 409)
definitionCHROMAT_FILE: MSMg01no094_b16.b1 PHD_FILE: MSMg01no094_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:36 2005CHROMAT_FILE: MSMg01no094_b16.g1 PHD_FILE: MSMg01no094_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,784,675 - 78,785,043)(78,666,634 - 78,666,971)
sequence
CGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATTGTTTTCAATAGCTGAGTAGTACTCCATTTTGTAAATGTACCACA
TTTTCTGTATCCATTCCTCTGTTGAGGGACATCTGGGTTCTTTCTAGCTT
CTGGCTAGTATAAATAAGTCTGCTATGAACATAGTGGAGCATGTGGCCTT
ATTACCAGTTGGAACATCTTCTGGGTATATGCCTAGGAGTGGTATTTCTG
GTTCCTCAAGTTCCTCTGTCCAATTTTCTGAGGAACCGCCAGACTGATTT
CTAGAGTGGTTGCACCAGTTTGCAATCTCACCAGCAATGGAGGAGTGTTC
CTCTTTCTCTATATCCTTGCCAGCATCTGCGGTCACCTGAGTTTTTTATC
TTAGCCATTCTGACTGGTATGAGGTGGAATCTCAAACAGCCTAGTACACA
GTTTCAAAACCAAAGAGCATTTAAAAATGAGCTCAAAAGATGTCTAATGG
CTTAGTGACAAGGGGCTAAAATGAAGGGAGGTTGGCTAGCGATCACTTCT
TGTTCATTTCCTGTTGAGTAAATTCTGGGAATCACCTTGGATTAGATTCA
TTAGAAGCCAAAGAGAGCTGAGGTAAAGTCATTTGATGCCATAATGGCAG
CTGCTTAATGAACTATTGGACTGCCTAAATCACAGGT

AATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAAGAACCCATAAGTGCTGGGGATACTTA
TGACTGAGAGAGGACCCAGGTAGGCTCGAGCATCCCACATCAAGCATCCT
CTAATGGAGTCTTCTCTGTCCTGTCATGCGCTCAGTGTCTGTGGGAATAT
GAGAGAAACACGAACAGTACTCCTGGTACTAACGCAGCAAACAGTCAGAA
GGCAACGGAAACACAAAATCAGTGGCACTTTAGGTGAATATGGTTAAAAT
GTAAGCAGCAGCAGAAACCCTCAAAGGAAAGATTGGAGTGAAGTCAGGAG
GAGGAGGGACTAAGGTGAGGAACCGAAGGATGGGAAAAGCCAAACCGGGG
TAAGTGAGAGGACAGTTAAGGCAGAAGGACCTATACCAGTCAGCTCTGCA
GCAGCAGGCAGGCTGGAGAAAGCTCCACACTTATATTCAGTTCACACACA
CTCCTATACACACATATTCACCACACACACACACACTATTCACACACTCA
CTATACACATATACTCATTACATATTCTTTACTATACACACATACTTCCC
ACACCCATTCCACACTTTCATACCCCTTTTCTACCCCCCCTTACTTTCCT
CACTTTTATTCCTATATACTTCCACTTTTTACTTTATCTCCCTATACCCT
TTTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_b16.b1 MSMg01no094_b16.b1 CHROMAT_FILE:
MSMg01no094_b16.b1 PHD_FILE: MSMg01no094_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:36 2005
         (560 letters)



>mm_chr14_78784084_78785043
          Length = 960

 Score =  690 bits (357), Expect = 0.0
 Identities = 366/369 (99%)
 Strand = Plus / Minus

                                                                       
Query: 192 aggagtggtatttctggttcctcaagttcctctgtccaattttctgaggaaccgccagac 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 960 aggagtggtatttctggttcctcaagttcctctgtccaattttctgaggaaccgccagac 901

                                                                       
Query: 252 tgatttctagagtggttgcaccagtttgcaatctcaccagcaatggaggagtgttcctct 311
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 tgatttctagagtggttgcaccagtttgcaatctcaccagcaatggaggagtgttcctct 841

                                                                       
Query: 312 ttctctatatccttgccagcatctgcggtcacctgagttttttatcttagccattctgac 371
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 840 ttctctatatccttgccagcatctgctgtcacctgagttttttatcttagccattctgac 781

                                                                       
Query: 372 tggtatgaggtggaatctcaaacagcctagtacacagtttcaaaaccaaagagcatttaa 431
           |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 780 tggtgtgaggtggaatctcaaacagcctagtacacagtttcaaaaccaaaaagcatttaa 721

                                                                       
Query: 432 aaatgagctcaaaagatgtctaatggcttagtgacaaggggctaaaatgaagggaggttg 491
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 aaatgagctcaaaagatgtctaatggcttagtgacaaggggctaaaatgaagggaggttg 661

                                                                       
Query: 492 gctagcgatcacttcttgttcatttcctgttgagtaaattctgggaatcaccttggatta 551
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 gctagcgatcacttcttgttcatttcctgttgagtaaattctgggaatcaccttggatta 601

                    
Query: 552 gattcatta 560
           |||||||||
Sbjct: 600 gattcatta 592


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no094_b16.g1 MSMg01no094_b16.g1 CHROMAT_FILE:
MSMg01no094_b16.g1 PHD_FILE: MSMg01no094_b16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:36 2005
         (338 letters)



>mm_chr14_78666434_78667171
          Length = 738

 Score =  623 bits (322), Expect = 0.0
 Identities = 334/338 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagaacccataagtgctggggatacttatgactgagagaggacccaggtaggctcgagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagaacccataagtgctggggatacttatgactgagagaggacccaggtaggctcgagc 260

                                                                       
Query: 61  atcccacatcaagcatcctctaatggagtcttctctgtcctgtcatgcgctcagtgtctg 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 atcccacatcaagcatcctctaatggagtcttctctgtcctgtcatgcactcagtgtctg 320

                                                                       
Query: 121 tgggaatatgagagaaacacgaacagtactcctggtactaacgcagcaaacagtcagaag 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 tgggaatatgagagaaacacgaacagtactcctgatactaacgcagcaaacagtcagaag 380

                                                                       
Query: 181 gcaacggaaacacaaaatcagtggcactttaggtgaatatggttaaaatgtaagcagcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcaacggaaacacaaaatcagtggcactttaggtgaatatggttaaaatgtaagcagcag 440

                                                                       
Query: 241 cagaaaccctcaaaggaaagattggagtgaagtcaggaggaggagggactaaggtgagga 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagaaacccacaaaggaaagattggagtgaagtcaggaggaggagggactaaggtgagga 500

                                                 
Query: 301 accgaaggatgggaaaagccaaaccggggtaagtgaga 338
           |||||||||||||||||||||||| |||||||||||||
Sbjct: 501 accgaaggatgggaaaagccaaactggggtaagtgaga 538


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space:   239841
Effective search space used:   239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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