BAC Information

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BAC

Clone NameMSMg01-095I23
Chromosome14 (Build37)
Map Location 31,633,590 - 31,633,778
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665431, Selk, Actr8, Il17rb, Chdh, Cacna1d, LOC665399, Dcp1a, Tkt, Prkcd, EG665466, Rft1, Sfmbt1
Downstream geneTmem110, Mustn1, Itih4, Itih3, Itih1, Nek4, Spcs1, Glt8d1, Gnl3, Pbrm1, EG432834, Nt5dc2, Stab1, Nisch, Tnnc1, Sema3g, Phf7, Bap1, Dnahc1, Capn7, Sh3bp5, Mettl6, Eaf1, Colq, Hacl1, Btd, Ankrd28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095I23.T7 (MSMg01no095_i23.b1)MSMg01-095I23.TJ (MSMg01no095_i23.g1)
ACCAG312444AG312445
length782803
length of high quality
(start - end)
189 (190 - 378)41 (126 - 166)
definitionCHROMAT_FILE: MSMg01no095_i23.b1 PHD_FILE: MSMg01no095_i23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:37 2005CHROMAT_FILE: MSMg01no095_i23.g1 PHD_FILE: MSMg01no095_i23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTNCCCCCTTTTCTCCC
TTTTNNCTNTAATCTATAATTGCGGCGCTAAACGACTCCTATTTTCATAT
ATCCGCGGAATTCTAGGCCGTTTTCCCATAATGAGACCCTGCCCTTTTTA
AAACTGTTTTTATTTCATGTATCTATTATACACCCAGGGGTTAGGCTGGG
TAGCAGTTCCGATGCTGGGATGTTTTAAGTTTGATAATAGCTTGCATTGT
TGGGGTAAGTGGCTTATGTTGCTCATTTGTATGTGAAGTCTGTTTCTGAG
ACAGCCAGCCTCAAGCTTTTTAAAGGTATGCTGTGAGGAGAGTGTGTGGA
GTTCACCTGCAGCTGTCCTCATAGCTTGCCTTTTTTTTTAAATTTTTATG
ATCCATCTTTAACTTGAGTTGTTTTTTTTACCACCCCCCTCGCTGGACTA
TACTGTCCTCCCAGACTTGGAAACTTACCTGACCAAAACTAGAATTTACA
GCTATATTGGCCTTCTAGGGAAACCTTCAACTTTATGTACAGATTGGCTC
TGAAATTTGTTCCATATCTGCTGACTTCCATTGTGAAACATCTTCATCCC
TTTTCCAATACAGCGAATACCTTAATAGAGTCTTTTAATTACCCCTTTTC
CCCTTCTTTAACAATTTATACCGCTCCCTCGTTTTATTAATACCCGTATA
CCATTGGTACTGGCCCAGCTCCGGAAAATGAAATATTTGGTTAAATCGCC
CATTTCTCCCTTTCAATACACCCCGTTTTTTA
NTTTTTTTNNNNNNNNNNTTTCCNNNNNCCTTGCNNNNNNNCCTCTCCTN
TATTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTCTGTCTGAATTCGGCACCCCATC
TAGCTCAGTCATGAGGGATTGGCCCACGCTTTGAAAACACAACACTTGAA
AGACAGGGTTAAGAGAACCCCTTGGCTGGCTTTTTTTTTTTTTTTTTTTT
TTTTGGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGA
GCTCACTCTGTAAACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTC
TGCCTCCCGAGTGCTGGTATTTTTTTGTGCGACACCACGCCCGGGCCTTG
GCCGGTTTTTATAATTCCCCCCCCCCCCCGGAATGAGTTATGGAAATTGG
TTATCCCTAACGTTACCCCGAAAAAAAAAAAAAAATATGTGGGGGGGGGG
GGGGGTCACTCTTCTAATATGCGTCGCTGACTTTTGCCCTCGCCACCTCT
TTCCCCGATGCAGCCCTCTTTTTCCCGTTATCAGCGTGCCTCTTTGGCGC
CCCCCCTCTTCAATAAATTTATTCGCATTCCCCCTCACCCCCCGCCAATA
TTTATTGGCCGCCCGCGCATACCGTCTTATGATGAGTCGAGATACGAGTC
CGACTTCTTCCAGGGCGAAAAACCACCCACATAAATTTTCTTTTTTATTA
CCTACTGGGGTTCTGATGCCACCAGATTATCGATTTTCTCTTTATAGTAC
ACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_i23.b1 MSMg01no095_i23.b1 CHROMAT_FILE:
MSMg01no095_i23.b1 PHD_FILE: MSMg01no095_i23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:37 2005
         (189 letters)



>mm_chr14_31633390_31633978
          Length = 589

 Score =  350 bits (181), Expect = e-101
 Identities = 187/189 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttaggctgggtagcagttccgatgctgggatgttttaagtttgataatagcttgcattg 60
           ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 201 gttaggctgggtagcagttccgatgctgggatggtttaagttcgataatagcttgcattg 260

                                                                       
Query: 61  ttggggtaagtggcttatgttgctcatttgtatgtgaagtctgtttctgagacagccagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggggtaagtggcttatgttgctcatttgtatgtgaagtctgtttctgagacagccagc 320

                                                                       
Query: 121 ctcaagctttttaaaggtatgctgtgaggagagtgtgtggagttcacctgcagctgtcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcaagctttttaaaggtatgctgtgaggagagtgtgtggagttcacctgcagctgtcct 380

                    
Query: 181 catagcttg 189
           |||||||||
Sbjct: 381 catagcttg 389


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)