BAC Information

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BAC

Clone NameMSMg01-096C01
Chromosome14 (Build37)
Map Location 102,521,305 - 102,521,546
singlet/doubletsinglet
Overlap genenone
Upstream gene1700110M21Rik, LOC100043421, LOC382936, Tbc1d4, Commd6, Uchl3, Lmo7, LOC100043795, LOC545567
Downstream geneLOC669278, Kctd12, LOC668699, Irg1, Cln5, Fbxl3, LOC100043441, Phr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096C01.T7 (MSMg01no096_c01.b1)MSMg01-096C01.TJ (MSMg01no096_c01.g1)
ACCAG312878AG312879
length699714
length of high quality
(start - end)
241 (71 - 311)317 (73 - 389)
definitionCHROMAT_FILE: MSMg01no096_c01.b1 PHD_FILE: MSMg01no096_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:22 2005CHROMAT_FILE: MSMg01no096_c01.g1 PHD_FILE: MSMg01no096_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCAAAATTTGCGGCGCTAAACGACTCCTATAGTCAGAAGAGCGCGGAAT
TCGTTTAGTTTCCCAAAAACTGGGGCCTTCTACTAACATGAATGCAAATT
CGGAGAAACAACATAATTCTGAATCAAATGTTTTCAAGTTTTAATATCCC
ACCTTGCTTTGCAATCACAGAGTAACTTCACTGGGGGGTGGGGTGGGGGT
ACATAAAGCACAAAGCTGTGAGTAGTGAGGACTCAAAGGTCTGGGCATTT
CTAGTTGAAAAGTCCAGTCTCAAGTCTGGGGAAATAGCTCCTAATACATT
GGGGGATATTTAAAATAATATTTAATAAATATCCCTCTATATATTTGTGT
TGAAAACAATGTTCCAAGTTATAATTACTTGCATTGTGACTTATAACAAC
CAAACTATCTTTTAAAATGATACGTGTAACACTGGCCAGCGTGAGAGTTT
ACTATTCATTGGATGCTTGATCATTGTCACTGCTTTTATCCTGCCTTTTA
CACACCACACAATCTCTGCCATTTAATGCCATTTGAGGAAAATGGTATTT
TTTTCCTTCTCAGACCTTCAGAGAGCTTCGTTAAGGCAGAGTGAGACACA
GACAATACCACAGACAGTTCCTGACAGCGAGAGTAGATATCTGTTCTTGA
CTTACTTGCATTACTACAAAGCCTTTTCCCCCGTCGTAGTTACTTTTTG
AATGAAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGA
AGCACCTGAAAAAATGCTCAACATCCTTAATCATCAGGGAAATGCAAATC
AAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAA
AAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACAC
TCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAGATCA
GTCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGGAGGATCCAGC
AATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGG
ATACATGCTCCACTATGTTCATAGCAGCCTTATTTACAATAGCCTGAAGC
TGGAATGAACCCAGATGCCCCTCACCAGAGGAATGCATACCGAAGACGCG
GCACATCTACATCAATGCAGTATTACCCACCTATTAAAAAGAATGATTTT
ACGAAATTCCTGTACACATGTATGCACCTGGAGGGAATCACCTTGATTGA
GTTAACTCATTCACAATGGAAGCTCCCACAACATGTACTCCCTGATAAGC
GGACATTATCCCATATCTTAACATATCCCTCATCTCTTAAACCACTTTCC
AAACACTTGTAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_c01.b1 MSMg01no096_c01.b1 CHROMAT_FILE:
MSMg01no096_c01.b1 PHD_FILE: MSMg01no096_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:22 2005
         (241 letters)



>mm_chr14_102521105_102521746
          Length = 642

 Score =  445 bits (230), Expect = e-129
 Identities = 239/242 (98%), Gaps = 1/242 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggggccttctactaacatgaatgcaaattcggagaaacaa-cataattctgaatcaaat 59
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 tggggccttctactaacatgaatgcaaattcggagaaacaaacataattctgaatcaaat 260

                                                                       
Query: 60  gttttcaagttttaatatcccaccttgctttgcaatcacagagtaacttcactggggggt 119
           |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 gttttcaagttttaatctcccaccttgctttgcattcacagagtaacttcactggggggt 320

                                                                       
Query: 120 ggggtgggggtacataaagcacaaagctgtgagtagtgaggactcaaaggtctgggcatt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggggtgggggtacataaagcacaaagctgtgagtagtgaggactcaaaggtctgggcatt 380

                                                                       
Query: 180 tctagttgaaaagtccagtctcaagtctggggaaatagctcctaatacattgggggatat 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctagttgaaaagtccagtctcaagtctggggaaatagctcctaatacattgggggatat 440

             
Query: 240 tt 241
           ||
Sbjct: 441 tt 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 642
Length adjustment: 9
Effective length of query: 232
Effective length of database: 633
Effective search space:   146856
Effective search space used:   146856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)