BAC Information

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BAC

Clone NameMSMg01-096I07
Chromosome14 (Build37)
Map Location 99,746,098 - 99,746,429
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC635593, LOC619716, LOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5
Downstream geneLOC100043400, LOC100043789, LOC668671, LOC668672, EG546623, Klf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096I07.T7 (MSMg01no096_i07.b1)MSMg01-096I07.TJ (MSMg01no096_i07.g1)
ACCAG313176AG313177
length694719
length of high quality
(start - end)
232 (77 - 308)334 (71 - 404)
definitionCHROMAT_FILE: MSMg01no096_i07.b1 PHD_FILE: MSMg01no096_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:54 2005CHROMAT_FILE: MSMg01no096_i07.g1 PHD_FILE: MSMg01no096_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAAGCCGC
GGAATTCCACTGGTATGTCGAAAATGCATCTGCCTCTGTCTCCTCCTTCC
CCTATCTAGATCTGATTTTTTTTATTCCCTTTATATATTTATCTTTATTC
ACTTTTTTATTACATATTTTCTTTATTTGCATTTCAAATGTTATTCCCTT
TCCTGGCTTCCTCTCTGAAAACCATTCTCCCCCAATCCCCTCCCTGCTTC
CTCTACTCCTCAACCCATCCACTCCCACTTCTTGGTCCTGACATTCCCGA
ACACTGGGGCATAGAGCCTTCACAGTATTTTGGGCCTCTCCTCCCATTGA
TGACTGACTACGATATCCTCTGCTCCTTATAACGAAAGAAGTCATGCAAC
CCTGCAAGAGTAAACTTTGGCCCCTCGATTAATTTTCCCACTATCTTCTG
GCCCCACATGGATTTCTCTCTTTTCTCCCTCCCTTTCTCCCGGGTCATTT
TCACTCTTTCTCTTTCACTCTTGACATCCCCTTTTTTCTACTCTCTATTC
CACTCCTTTTCACCCCGTACCCACATTACTCACAATAATCCTTACTTTCC
ATCCCCTTACTTTATCCATTTTCCCTCTCTACATTTTCATAATCCTCTCT
ATTCATTTTAACCTTTATACTACTTTTTTTACTTTTTCCCAACG
CGATGTAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTCGTAATTCTGCGAAGAGCCTCACTTCTGAGGATGCT
GGAATACACAGGACATGACACGTACACTTAACTTTAGCTCCTTTGCTAAC
GAGAACGCCTTGCACAAGATACTTAATCTTTAGAAACTCCTGTCCCTCCC
TTGCAAAGCAGAAGTAATACCTGCCCTGCAGCTTATTGTGAAGATTAAGT
GTGATAATGTATGGAAAACTTTGAGGCTCATGACTGGCCTTGAGAGTGCT
CATCCACCAGTTACTGCTTGGTATTTATGGTGTCCTTTTCTTTCAAGATA
ATAAAACACCTGGTATCATCCGCATTCCCGAAGTTCAACTATTTTCTAGC
TGCTGATATTGGATAGCGAAACAATTTTGATATGCACTTTAATTCTATAT
CCAGCATCCTGCAAAGATTCGTTCACGATACAGACTTTTTATCCACCTCT
TTGCTTTTGTCTTTTTGAGATAGTAGTGCTGTTAAGTTTAGGTCTCCCCT
GTTCTCTCTCTCTGTCTACTCTCTTCTTCCGCCTTCCCTTTTTTCTGCAT
CATTTACTTTTCTTATTCAGACTATTTCTTTTACGCTTTTGGACTCTCTC
CTGCTCTCTCTACCCATTCATCTCACATTACCCCTCCTTCACATCCATTC
CTTTTCTTCTCCAACCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_i07.g1 MSMg01no096_i07.g1 CHROMAT_FILE:
MSMg01no096_i07.g1 PHD_FILE: MSMg01no096_i07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:54 2005
         (334 letters)



>mm_chr14_99745898_99746631
          Length = 734

 Score =  619 bits (320), Expect = 0.0
 Identities = 329/332 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgcgaagagcctcacttctgaggatgctggaatacacaggacatgacacgtacactta 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 tctgcgaagagcctcacttctgaggatgctggaatacacaggacatgacacgtagactta 260

                                                                       
Query: 61  actttagctcctttgctaacgagaacgccttgcacaagatacttaatctttagaaactcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actttagctcctttgctaacgagaacgccttgcacaagatacttaatctttagaaactcc 320

                                                                       
Query: 121 tgtccctcccttgcaaagcagaagtaatacctgccctgcagcttattgtgaagattaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtccctcccttgcaaagcagaagtaatacctgccctgcagcttattgtgaagattaagt 380

                                                                       
Query: 181 gtgataatgtatggaaaactttgaggctcatgactggccttgagagtgctcatccaccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgataatgtatggaaaactttgaggctcatgactggccttgagagtgctcatccaccag 440

                                                                       
Query: 241 ttactgcttggtatttatggtgtccttttctttcaagataataaaacacctggtatcatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 ttactgcttggtatttatggtgtccttttctttcaagataataaaacacctggcatcatc 500

                                           
Query: 301 cgcattcccgaagttcaactattttctagctg 332
            |||||||||||||||||||||||||||||||
Sbjct: 501 tgcattcccgaagttcaactattttctagctg 532


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space:   235625
Effective search space used:   235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)