BAC Information

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BAC

Clone NameMSMg01-096I08
Chromosome14 (Build37)
Map Location 109,538,688 - 109,539,054
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668761, Slitrk1
Downstream geneLOC640892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096I08.T7 (MSMg01no096_i08.b1)MSMg01-096I08.TJ (MSMg01no096_i08.g1)
ACCAG313178AG313179
length679708
length of high quality
(start - end)
377 (46 - 422)367 (74 - 440)
definitionCHROMAT_FILE: MSMg01no096_i08.b1 PHD_FILE: MSMg01no096_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:54 2005CHROMAT_FILE: MSMg01no096_i08.g1 PHD_FILE: MSMg01no096_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTCTATATTTGCGGCGCTATACGACTCCTATTTCGAGAGGATCCG
CGGAATTCCTTCTTTATCTCCTCTACCATCATCATGAGATATGCTTTTAA
ATCCAGGTCTACCTTTTCAGGTGTGTTAGGGTGTCCTGGACTGGGAGAAG
TGGGCGTTCTGGGTTCTGATGATGGTGAGTGGTCCTGGTTTCTGTTAGTA
GGATTCTTACGTTTACCTTTCGCCATCTGGCAATCTCTGGAGTTAGTTGT
TATAGTTGTCTTTGTTAAGAGATTGTTCCTCTGTTGATTTTGTTACCCTC
AATCAGCAGACGTGGGAGACAAGCTCTTTCCTCTGAGTTTCAGTGGTCAG
AGCAGTCTCTGTAGGCAAGCTCTCCTCTTTCGGTGAAGGTGTACAGTTAT
CTGGTGTTTGGACCTCCTCCTGGCTGATTGTGTACTCCCAATACAGGATC
TTTTGCAGAAGCTGTGTTGCTTTGCCTCAGTATGGTGCTCGGCTGTCTGG
AGTCTAAGATGGTGCCACCCCAGAAGCTCTGCGACTCTTGCCCGTACCAC
GAACGGCTGGCCTCTGTATTCCATGCGGTCACCCGAGCTAGCCTACCCTC
CGCGTACTCCCGTATCCTAGAAGGTTCCTGCCGTTCCCTGTGATATAACC
CTTTTAGGTCGTTCACACCCTCCCGCCCC
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATGATATATAAGAGAAGACGCTTACAA
ATTATAATAGAGACACTTATGGAGGGTGGCTATTAACAAAAAGGGTGCAT
GCTCAATGATAAAGGCACAATCAGTCATTTTTACATAATAACCATGTTCA
AAAGCATTGGGCGTACGAGAAGACGTGGAATGCAGAGTATTTTGGAGAAG
TTGTAACATTTTAGAAAAGGAGCATCTTGCACATCCCTCATCTCTTCTTT
GGAAAATCTTGCGAGGCTGTTTGGAAGGACTTATGAACTGCATTCACACA
GTTACAGAGGGGTTAGGACAAGAAGAGCTATTGTTTCATCTTCAATAAGA
ATATGTATTATGCCAGCACCACCTGGCATGTCCTCGGTAGGTATAGAATG
ACGTGGTTCGAGACCCAGGGTCAGGTACAGCAAACATGGGCCTCCCTGAC
TGTCCATGTCTGCCATGGGCTTAAGGCTTATTTGACAATAATAATACTAA
TAATAATAATAATAATAACGCATATATATATATATATATGCTCTTTCCTG
GAATGTTCTCCCTGTTACCCTTAATGACTTCCTGATTACTCGATACAGCA
ATATCCTGGTTAACACTGGCGTGGCTAAAGTCCCCCCTATTGATTAACGC
TGGCCACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_i08.g1 MSMg01no096_i08.g1 CHROMAT_FILE:
MSMg01no096_i08.g1 PHD_FILE: MSMg01no096_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:54 2005
         (367 letters)



>mm_chr14_109538488_109539254
          Length = 767

 Score =  656 bits (339), Expect = 0.0
 Identities = 360/367 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgatatataagagaagacgcttacaaattataatagagacacttatggagggtggctat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 atgatatataagagaagacgcttacaaattataatagagacacttatggagggtggctat 508

                                                                       
Query: 61  taacaaaaagggtgcatgctcaatgataaaggcacaatcagtcatttttacataataacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 taacaaaaagggtgcatgctcaatgataaaggcacaatcagtcatttttacataataacc 448

                                                                       
Query: 121 atgttcaaaagcattgggcgtacgagaagacgtggaatgcagagtattttggagaagttg 180
           ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 447 atgttcaaaagcattgggcttacgagaagacatggaatgcagagtattttggagaagttg 388

                                                                       
Query: 181 taacattttagaaaaggagcatcttgcacatccctcatctcttctttggaaaatcttgcg 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aaacattttagaaaaggagcatcttgcacatccctcatctcttctttggaaaatcttgcg 328

                                                                       
Query: 241 aggctgtttggaaggacttatgaactgcattcacacagttacagaggggttaggacaaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aggctgtttggaaggacttatgaactgcattcacacagttacagaggggttaggacaaga 268

                                                                       
Query: 301 agagctattgtttcatcttcaataagaatatgtattatgccagcaccacctggcatgtcc 360
           | ||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 267 aaagctattgttttatcttcaataagaatgtgtattatgccagcagcacctggcatgtcc 208

                  
Query: 361 tcggtag 367
           |||||||
Sbjct: 207 tcggtag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)