BAC Information

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BAC

Clone NameMSMg01-096M07
Chromosome14 (Build37)
Map Location 89,126,763 - 89,127,227
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043317, LOC100043780, LOC668624, LOC668625, Pcdh20
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096M07.T7 (MSMg01no096_m07.b1)MSMg01-096M07.TJ (MSMg01no096_m07.g1)
ACCAG313368AG313369
length692705
length of high quality
(start - end)
275 (49 - 323)465 (72 - 536)
definitionCHROMAT_FILE: MSMg01no096_m07.b1 PHD_FILE: MSMg01no096_m07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:15 2005CHROMAT_FILE: MSMg01no096_m07.g1 PHD_FILE: MSMg01no096_m07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCAATCAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAAGCCGCG
GAATTCTCTGTTTATTTCTATAACCCATTTTTTGATTGGGTTGTTTGGAA
TTTTCGTGGTCAGCTTCTTGATTTATTTACATATTTTTGATATTAGCCTC
TATAGGTTTTGGGGTTAGTGAAGTTTTTTTTCCCAATCGGTAAGTTGCTG
ATTTGTCATATTGACTATGTCCTTTGCCTTACAAAAGCTTTCCTGTTTCA
TGAGGACCCATGAATCAATTATTGATCTTAGAGGATGAGGCACTGGAGAT
CTGTATAGGAAATTTCCCTTGTGCTTTTGAGTTCAAGACTCTTTCCCACT
TTATTTTCTATTATATTCAGCGCATCTGGCTTTATGTTGAGCACCTTGAT
CCACTGGGATTTGAGCTTTGTCCCAGATGACAAATATGGATCTATTTTCA
TTTTTCTACATACAGTCAGCCAGTTAGACCAGCACCATTTATTGAATATG
CTTTCATTTTTCCATTGCATATCTTTGGCTTCTCTGCTCAAGATCATGTG
TCAGACCATTGGATATATATTTACCTGATCATCCATCTATACCACTCTTT
TTCACATTCCAAAAAAAAATTATCCTCCCATGCCACATTTCTCCCGTGTT
TCACTATGTTCCTAACTCCCTTGTTCTTTGCTTTTCCCACCT
CGATGAAGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACATTTTAGCTCTGTGTTGAAGATACCAA
GAGCAGCAATATCCTATTTGTATGGTAAAGGAAGTCTCAGCTTGTCCCCA
TTTCCATCCTCAATGGCCAATGACTCATAGGTAGGATCTAGTTTTAGATT
TGGAAATTTCAGCAATAACCCGATGGCTCCTAGTAAGGCTTTTACCCACT
CATGTAGGGGCTTTTTATCAAACTCCTTAAGTGCTGAGAGGATCCTTTAG
CTGTCCGTCATTGAAGCATACTGTGGAAAGAGATGAGATTGTAAACAACC
GGTTCATACTGACAATTCATTGTCAGCATGTTTAAAACACGGTATAATTT
GAGAAAAATTTCCCAGGACAAGATCATTCACATTTCAGATTTCCAGGTAG
CAATCATTCCAACTTCATGTACACAATAAGGTGTGACTATGAAGAAATTC
CTTTACAAAGTACATGTGGCTATGAGGATGGCTCCCGTGGCTGTATGGTT
AGTGGGGCTCCTGCATCTGCTCTGCCACAGGGCTCGGCAGCTTGGGGAGG
CTGGATGTGGGACGCTTGACTATGCTTACTCCATGTGTCAGGCTATGGAG
AAGACACGGGGCACTGGTTTGGCAAGGAAGAATCACATTCTGGCCCCGGG
ACCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_m07.g1 MSMg01no096_m07.g1 CHROMAT_FILE:
MSMg01no096_m07.g1 PHD_FILE: MSMg01no096_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:15 2005
         (465 letters)



>mm_chr14_89126563_89127427
          Length = 865

 Score =  899 bits (465), Expect = 0.0
 Identities = 465/465 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   acattttagctctgtgttgaagataccaagagcagcaatatcctatttgtatggtaaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acattttagctctgtgttgaagataccaagagcagcaatatcctatttgtatggtaaagg 260

                                                                       
Query: 61  aagtctcagcttgtccccatttccatcctcaatggccaatgactcataggtaggatctag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtctcagcttgtccccatttccatcctcaatggccaatgactcataggtaggatctag 320

                                                                       
Query: 121 ttttagatttggaaatttcagcaataacccgatggctcctagtaaggcttttacccactc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttagatttggaaatttcagcaataacccgatggctcctagtaaggcttttacccactc 380

                                                                       
Query: 181 atgtaggggctttttatcaaactccttaagtgctgagaggatcctttagctgtccgtcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgtaggggctttttatcaaactccttaagtgctgagaggatcctttagctgtccgtcat 440

                                                                       
Query: 241 tgaagcatactgtggaaagagatgagattgtaaacaaccggttcatactgacaattcatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaagcatactgtggaaagagatgagattgtaaacaaccggttcatactgacaattcatt 500

                                                                       
Query: 301 gtcagcatgtttaaaacacggtataatttgagaaaaatttcccaggacaagatcattcac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcagcatgtttaaaacacggtataatttgagaaaaatttcccaggacaagatcattcac 560

                                                                       
Query: 361 atttcagatttccaggtagcaatcattccaacttcatgtacacaataaggtgtgactatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atttcagatttccaggtagcaatcattccaacttcatgtacacaataaggtgtgactatg 620

                                                        
Query: 421 aagaaattcctttacaaagtacatgtggctatgaggatggctccc 465
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagaaattcctttacaaagtacatgtggctatgaggatggctccc 665


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space:   389025
Effective search space used:   389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)