BAC Information

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BAC

Clone NameMSMg01-096M15
Chromosome14 (Build37)
Map Location 120,675,545 - 120,676,037
singlet/doubletsinglet
Overlap geneMbnl2
Upstream geneHs6st3, LOC619601, EG621324, LOC100043830, Oxgr1, Gabarapl2-ps, LOC100043831
Downstream geneRap2a, LOC668835, LOC668837, Ranbp5, Farp1, LOC100043837
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096M15.T7 (MSMg01no096_m15.b1)MSMg01-096M15.TJ (MSMg01no096_m15.g1)
ACCAG313383AG313384
length1,069776
length of high quality
(start - end)
---493 (126 - 618)
definitionCHROMAT_FILE: MSMg01no096_m15.b1 PHD_FILE: MSMg01no096_m15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:16 2005CHROMAT_FILE: MSMg01no096_m15.g1 PHD_FILE: MSMg01no096_m15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGGGGTTTTTGTGTGGGTGGGGGGCTTCCNTCCCCCCGCTCGCNCCGCGA
AAACCTTACCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGTGCG
GAAGCTCGANCGGNAANNCNNNNNNAGCTTTTCTATCACCAGAGGCAAAA
CACANNNNNCCATTNNCCCCANNNACAGGNGGGNANCNCNNTNACAGCCC
GCCNNAGNNANANNANANNCNAGAGCCACANTTNNNAAANCAACATTTAT
TCATGGTCCCACGAGGACAATCACTATACGCACTACTGCCTCTTCATCCA
TAATGTGNNNATTCTAAGCGTTAATTATCATTGTAGCTGAGCTATACAAC
GTTATTCTTCCTTATTGTCTTTAAAAGACAACTTTTTTACTGGGTAGTGG
CCAAATGATACTTCAGAGGTAAATCTGTGGTCCTTCGTGGGAGCATACAT
TTTTTTGTTTTTTTCAACGCCCAGCACGGAGCNGACCTTACCGGCCAATG
GGTAAGTGTGACACTGCCGCGCCTGCACTTCTGGATTTTCTCTATTGTCT
GGCCTCTGGGCTCAATGCTCACATCGCTTCTCCCTGCTCACCAGTGTAAC
GCTACTCCCATCTAAAGTAACATTAGCCACACTATGCNTCTTCCTATGCG
TAAAGTGGAAGACATTTGGCCTTCATGTAATCGAATGAATTAAGCCTACT
GCGACGTCCACCCCAGCATATCAGTGAATTGTCTTCCCCTTGCCTACCTA
CTATGACCAGCCCATGAATTCAAGAGCATCGTTCCCCCCTTGGCTTATGT
GTTCCCTCACACCCTGCCTCTAGATTTTCTCTATTCCTATACCTATCCAC
CTCTATTGTATTGGCTACTCTATACCCTCTTATCTCGGACAAAGCCTCCA
GCCTGAAACGCAAAGTCTACTCATCCAACAACTTCCAAAGGTAACCAGCA
CATATTGCAGTATATTCTTTTCTTATACTCGGCCCCGCCCGTCACTCTCT
TCCACCTTTTCTCACCCTCGCCTTCATCGTACAACCACCTCGCTCACTTA
TCCTTGTCATTTATGTGAG
TTTTTGTTTTTNNNNNNNNNGGTTGGGCCTCTTTCTCCNCAATAACNNNN
CACGATGATATGNGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTAACACAGAGAAAGCCTTCCCTT
CTCCTGGGCCAAGTGTGTTAAAAATACATCTGCTTCACCCTTTCCAGCCG
CTGCTTCTCGGCAAGAAAGTTGATCTGGCTGGGCATAGTGAGAGCCCAGC
TTTAAAAGCTAGCCTGCTCTCATTAAATTATTCTGCTGGCTGTGTGTTCT
CATTAAAAATGCATACAGATCAGATAATTGCAGTAAGCATTATTAACCCA
GCCTTACTTTTGAATATAATGGTTCCACTTTTAAGCTGGAAACAAAGACA
GAGGCTGCCAGGAAAAGCAATGTAAACATTGAACCACAGTGTCTAAGACT
AGCCAGGAAGCTTCCTCTTCTGCCCTGGTGCTGCTTAAAATGTGCTTTTG
AAACTCAATTAAAGCCATTGCCCTGTAGCACCAGGGTGGCCCCCAATTTC
CAAGAAACAGACATATTTTCGTCCCAAACGTTCAGCCGATGATTATTTAA
GCAGATTTTTTTTTTAAATTCCTAATTTCAAGTATGTTTTCAAAGAACAG
GAAACATGTAAACTTTATTCTGTAGCCCACTCTGGCAGTAAAAAACCTCC
ATTATCTTAAGATAATCCTGGCCTGTATCTTTCAGATAATTAACGAAAAA
AATAACTAAACAAATCTGCCCTTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_m15.g1 MSMg01no096_m15.g1 CHROMAT_FILE:
MSMg01no096_m15.g1 PHD_FILE: MSMg01no096_m15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:16 2005
         (493 letters)



>mm_chr14_120675345_120676237
          Length = 893

 Score =  946 bits (489), Expect = 0.0
 Identities = 492/493 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttaacacagagaaagccttcccttctcctgggccaagtgtgttaaaaatacatctgctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 693 tttaacacagagaaagccttcccttctcctgggccaagtgtgttaaaaataaatctgctt 634

                                                                       
Query: 61  caccctttccagccgctgcttctcggcaagaaagttgatctggctgggcatagtgagagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 caccctttccagccgctgcttctcggcaagaaagttgatctggctgggcatagtgagagc 574

                                                                       
Query: 121 ccagctttaaaagctagcctgctctcattaaattattctgctggctgtgtgttctcatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 ccagctttaaaagctagcctgctctcattaaattattctgctggctgtgtgttctcatta 514

                                                                       
Query: 181 aaaatgcatacagatcagataattgcagtaagcattattaacccagccttacttttgaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 aaaatgcatacagatcagataattgcagtaagcattattaacccagccttacttttgaat 454

                                                                       
Query: 241 ataatggttccacttttaagctggaaacaaagacagaggctgccaggaaaagcaatgtaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ataatggttccacttttaagctggaaacaaagacagaggctgccaggaaaagcaatgtaa 394

                                                                       
Query: 301 acattgaaccacagtgtctaagactagccaggaagcttcctcttctgccctggtgctgct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 acattgaaccacagtgtctaagactagccaggaagcttcctcttctgccctggtgctgct 334

                                                                       
Query: 361 taaaatgtgcttttgaaactcaattaaagccattgccctgtagcaccagggtggccccca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 taaaatgtgcttttgaaactcaattaaagccattgccctgtagcaccagggtggccccca 274

                                                                       
Query: 421 atttccaagaaacagacatattttcgtcccaaacgttcagccgatgattatttaagcaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 atttccaagaaacagacatattttcgtcccaaacgttcagccgatgattatttaagcaga 214

                        
Query: 481 ttttttttttaaa 493
           |||||||||||||
Sbjct: 213 ttttttttttaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)