BAC Information

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BAC

Clone NameMSMg01-097B19
Chromosome14 (Build37)
Map Location 81,225,477 - 81,225,767
singlet/doubletsinglet
Overlap genenone
Upstream geneEG629734, Olfm4, LOC672828
Downstream geneLOC639207
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097B19.TJ (MSMg01no097_b19.g1)
ACCAG313627
length696
length of high quality
(start - end)
291 (107 - 397)
definitionCHROMAT_FILE: MSMg01no097_b19.g1 PHD_FILE: MSMg01no097_b19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTTTATACTTTGGGGGACCCAAATTAGCATAATATAAGTAGCATCA
GATGAAACCCATGAAGACTAGGTATAAGAATTTGTTGTTGTTTTACTATA
AACATCCAGGGATATGTGCATTGTCTCTTTCCTTGTTATCCTTTTTGATA
GATTGGCAATTGTTTCCTAAGCTTATGTCTTTCATGTAGTATTAATCAAC
TGTGCGAATATCAAACAACTCTTCCTTGTTCATAACATTCAAACTCAACA
TCTTGCACAAAGGTATAGAATAATTATGTATGCTTTATGCTTTCAGTGTA
ACCATAGGTATCAATTTTAAAAACATTTTGCCTTGCACTGAGGATCTTTC
TAGTGCGTGACAGAAAGGAATAGAGTATGTGTTTTGTTTTGTTTTTATTG
ACCTGGGGAAAGGTCCAGTAGGAATCTGACATATGCAAATCAATGTCATT
GCTTTGGGAGCATTAATACTAAGATAGAACATTAGTTAACATGTTTTTGA
TTCCCAGTGTCTATCTTCAGAATACTGCCAGAGCGCAAATTATTTTAAAA
ATTTACTACGCCCATTCACACTATATATTGAAATGCATAAAATTATGTCT
CCAGGAAGGCAGAAAAATTCCCTTGAAGTTAACACGACTAAAATTT
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_b19.g1 MSMg01no097_b19.g1 CHROMAT_FILE:
MSMg01no097_b19.g1 PHD_FILE: MSMg01no097_b19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:44 2005
         (291 letters)



>mm_chr14_81225277_81225967
          Length = 691

 Score =  532 bits (275), Expect = e-155
 Identities = 287/291 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acccatgaagactaggtataagaatttgttgttgttttactataaacatccagggatatg 60
           |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 201 acccatgaagactaggtataagaatcagttgttgttttactataaacatccagggatatg 260

                                                                       
Query: 61  tgcattgtctctttccttgttatcctttttgatagattggcaattgtttcctaagcttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcattgtctctttccttgttatcctttttgatagattggcaattgtttcctaagcttat 320

                                                                       
Query: 121 gtctttcatgtagtattaatcaactgtgcgaatatcaaacaactcttccttgttcataac 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 gtctttcatgtagtattaatcaactgtgcaaatatcaaacaactcttccttgttcataac 380

                                                                       
Query: 181 attcaaactcaacatcttgcacaaaggtatagaataattatgtatgctttatgctttcag 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 attcaaactcaacatcttgcacaaaggtatagaataattatgcatgctttatgctttcag 440

                                                              
Query: 241 tgtaaccataggtatcaattttaaaaacattttgccttgcactgaggatct 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtaaccataggtatcaattttaaaaacattttgccttgcactgaggatct 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)