BAC Information

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BAC

Clone NameMSMg01-097D05
Chromosome14 (Build37)
Map Location 19,823,754 - 19,824,064
singlet/doubletsinglet
Overlap genenone
Upstream geneThrb, LOC627608, Nr1d2, LOC632287, Rpl15, Nkiras1, Ube2e1, LOC627717, LOC238963, Ube2e2
Downstream geneLOC627741, LOC100042299, LOC675069, LOC100042322, LOC632470, EG632477, EG632498, EG667341, LOC667344, LOC619996, EG434616, LOC675165, 1700110I01Rik, EG664814, LOC100039452, LOC100038983, LOC100039441, EG432825, LOC673583, EG664855, Nid2, 2700060E02Rik, LOC100039534, Gng2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097D05.T7 (MSMg01no097_d05.b1)MSMg01-097D05.TJ (MSMg01no097_d05.g1)
ACCAG313694AG313695
length682808
length of high quality
(start - end)
155 (117 - 271)293 (128 - 420)
definitionCHROMAT_FILE: MSMg01no097_d05.b1 PHD_FILE: MSMg01no097_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:51 2005CHROMAT_FILE: MSMg01no097_d05.g1 PHD_FILE: MSMg01no097_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:51 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
ATTCAGAAGATCCGCGGAATTCTCACCTGTTTCCCACCGAATGGCAGAGA
AGCACCTGAAAAAATGTTACACATCCTTAATCATCAGGGAAATGCAAATC
AAAACATCCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAA
AAATTCAGGTGACAGCAGATGCTGGCGAGGATGCGGAGAAAGAGGAACAC
TCCTCCATTGTTGAGGAGATTGCAGGCTTGTACAACCACTCTGGAAATCC
GTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGATGATCCAGC
AATACCTCTCCTGGGCATATATCCAGAAGATGCACCAACTGGTAAATAGG
ACACATGCATCCCTATGTTCATAGCAGCATTATTTACAATAGCCAGAAGC
TGGAGAGAACCCAGATGCCCCTCAACACAAGAATGGATACAGAAAATGTG
GTACATCTACACATTGGAGTACAACTCAGCTATTAATAAGAATGAATTTA
TGAAATTCCTAGGCAAATGCATGGACCTGCAGGGCCTCATCCTGAGTGAT
ATACCACCTTCGTAATGGAACTCACACAAAATGTACTCACTGATATTTGN
ATTTTGTCTCTTTTTCACGTCGTCAAGCAGATGACTCTTACCCCCCCTGA
TTTTCAATTTTCTTGGCATAATCCATGGCCTC
GGAGAACCAAAAAATACAAGCAGTTCTGTCNCCNATTCCCCCCCTTCTNN
TTCTCGATGATATGCGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGATAACAGACACAGGTTCCC
CATTCAGTTTTTCAAGAACAGAAACACAGTAGGGGGAAGTACTCTAGGCA
CTGCAGAGAGACAAGGTAGTGTGTGCAGAGGGTCAGCGAACTTTAAACAT
GAAATAAAACTAGAACAGGCCCTCAGGAAAAAAAGACCCAAGAGATGTCC
AGTAGCTAAGTGAATTTTATTTCTTCCCTCAAAGTCAAAAGGTCGGGTTT
TCTTATTATTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTT
CTCTTCTCTTCTCTTCTCTTATCTTCTCTTCTCTTCTCTTCTCTTCTCTT
CTCTTTCTCTTCCCTTCTCTTCCCTTCTCTTTTCTCTTTTATCCCCCTCG
TCTTAGCCTCTAAAAATTGATATATGGTTACGATTCACGCTTTCCCTTCC
CCTTTTTTTTTCTTCCTACTCATTCTTTGTTGCAGACAAACTTACTCCCC
TTTATGCAATCATTTTACTCCCTGCGGTTGCTCCTTACTGGTAAAGCCTT
TCTTTCAAGACTCACCCACTGTGATTTTTGTGTATTTTCCTTCTTATGCG
TGCCGCCTTCCCAAATTGCTTGCCCTTTCGCCGCTTGCGAACCCGTATGC
CTGTTATGGCCACCCTTTATATCAATGCCCAGAATTTCCTTGTAATTACT
TCCAGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_d05.g1 MSMg01no097_d05.g1 CHROMAT_FILE:
MSMg01no097_d05.g1 PHD_FILE: MSMg01no097_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:51 2005
         (293 letters)



>mm_chr14_19823573_19824269
          Length = 697

 Score =  311 bits (161), Expect = 2e-89
 Identities = 265/315 (84%), Gaps = 31/315 (9%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgataacagacacaggttccccattcagtttttcaagaac----agaaacacagtagg 56
           ||||||||||||||||| ||||||| ||||||||||||||||    ||||||||||||||
Sbjct: 182 tttgataacagacacagattccccactcagtttttcaagaacagagagaaacacagtagg 241

                                                                       
Query: 57  gggaagta---------------ctctaggcactgcagagagacaaggtagtgtgtgcag 101
           ||||||||               ||||||||||| |||||||||||||||||||||||||
Sbjct: 242 gggaagtaccaacgctccctcttctctaggcactacagagagacaaggtagtgtgtgcag 301

                                                                       
Query: 102 agggtcagcgaactttaaacatgaaataaaactagaacaggccctcaggaaaaaaagacc 161
           |||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||
Sbjct: 302 agggtcagcgaactttaagcgtggaataaaactagaacaggccctcaggaaaaaaagacc 361

                                                                       
Query: 162 caagagatgtccagt----agctaagtgaat--tttatttcttccctcaaagtcaaaagg 215
           ||||||||| |||||    ||||||||  ||  |||||||||||||||| ||||||||||
Sbjct: 362 caagagatgcccagttgctagctaagt--atgttttatttcttccctcatagtcaaaagg 419

                                                                       
Query: 216 tcgggttttcttattattctc--ttctcttctcttctcttctcttctcttctcttctctt 273
           ||||||||| || || |||||  |||| |||| |||| |||| |||| || |||| ||||
Sbjct: 420 tcgggtttt-ttctt-ttctcatttcttttcttttcttttcttttcttttttcttttctt 477

                          
Query: 274 ctcttctcttctctt 288
            |||| |||| ||||
Sbjct: 478 ttcttttcttttctt 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 697
Length adjustment: 9
Effective length of query: 284
Effective length of database: 688
Effective search space:   195392
Effective search space used:   195392
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)