BAC Information

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BAC

Clone NameMSMg01-097F15
Chromosome14 (Build37)
Map Location 98,446,908 - 98,447,550
singlet/doubletsinglet
Overlap geneDach1
Upstream geneEG668659
Downstream geneLOC635593, LOC619716, LOC100043787, 2410129H14Rik, 6720463M24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097F15.T7 (MSMg01no097_f15.b1)MSMg01-097F15.TJ (MSMg01no097_f15.g1)
ACCAG313803AG313804
length691416
length of high quality
(start - end)
647 (43 - 689)---
definitionCHROMAT_FILE: MSMg01no097_f15.b1 PHD_FILE: MSMg01no097_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:03 2005CHROMAT_FILE: MSMg01no097_f15.g1 PHD_FILE: MSMg01no097_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATTCTGTCTCCTGTCCCTATGTGCTAAGCCACATTTCTCAGATCTAAA
CAAAGCAGTGATCCTGGTTAGTTTGTTTTCACTGTACATGGAGCGTATTG
TGTTAATTCATCTGTACTCTCTGGGGAGTGGATCTTAATTTCAGTGGCAC
AAGTTGGAAGTAACAGTACCTTCCAGACCACACTCTGGAAACCTTCCAAC
AAACATGTGATCAGGTGTGCAGCCTAATGCAAAACACGCCTTGTACCAAG
TACTTCGATGTTAGCATATACCCAAGGACCAGCAGTCTCAAAAATCCTGC
TCCTCAAATGTTACTTTTTAATTGTTTTAAAGAAAAGAAAATATTGCCTA
TGATAAATAATTAAGTTCTTTAAAAGTAGAAACTATTTGATTCAATTTAA
AGGTTTACAAAACTTGTTTTGTTAACATGAAGGATGATATTTTTCTGTAT
AGTATTTGATAAAACTATAATTACATCTTTTGAAAACACATATTTAGAAC
TCAAATCTATTACTAACCCATCCAAGATTAAATCATCTCAGGTTAATGGG
AAATTTTGGAAAGAGACACATTTATATGGACATCGCCAGCACACACTGAA
GGATACACCAATATAATCATAACTATTTTTCCTTTTACAAA
NAAAAANAAACCCCCCNCCCGCNCCAGAAGAGGGAGTGTCACGGAAAAAA
TCGACCCAGACAGGAACAGGCGAGCGCCCCGACNGGGAAAAAGAAAAAAG
NCNCCAGAGCAAACCCCCCCCCCCAAAAAAACACACCCAATTGANAGAGA
CGGAACAAAAAAAAAGAAAGAGACATTTTTTTGAGGCGATCCAGNCCGAT
ATACTACCTGAAGAGAAGAGATCTCCAAGAGAATAAGAACAAGCAGAAAA
CTCCAGCATGCTGAAATGGAAGAGGAAAGCGGTTACTGTTTTTAGCTAGT
TAAAGATATGAGGAAGTACAAGGAGCGAGCAAGCCTACTAAGAAAAAAGT
TGAAACTAACAGATATTTAACAAAGAGGAGGAACATGAACTCTGATTAAA
AGTCTTAGTTTTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_f15.b1 MSMg01no097_f15.b1 CHROMAT_FILE:
MSMg01no097_f15.b1 PHD_FILE: MSMg01no097_f15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:03 2005
         (647 letters)



>mm_chr14_98446704_98447750
          Length = 1047

 Score = 1228 bits (635), Expect = 0.0
 Identities = 641/643 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattctgtctcctgtccctatgtgctaagccacatttctcagatctaaacaaagc 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattctgtcttctgtccctatgtgctaagccacatttctcagatctaaacaaagc 264

                                                                       
Query: 65  agtgatcctggttagtttgttttcactgtacatggagcgtattgtgttaattcatctgta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agtgatcctggttagtttgttttcactgtacatggagcgtattgtgttaattcatctgta 324

                                                                       
Query: 125 ctctctggggagtggatcttaatttcagtggcacaagttggaagtaacagtaccttccag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctctctggggagtggatcttaatttcagtggcacaagttggaagtaacagtaccttccag 384

                                                                       
Query: 185 accacactctggaaaccttccaacaaacatgtgatcaggtgtgcagcctaatgcaaaaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 accacactctggaaaccttccaacaaacatgtgatcaggtgtgcagcctaatgcaaaaca 444

                                                                       
Query: 245 cgccttgtaccaagtacttcgatgttagcatatacccaaggaccagcagtctcaaaaatc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cgccttgtaccaagtacttcgatgttagcatatacccaaggaccagcagtctcaaaaatc 504

                                                                       
Query: 305 ctgctcctcaaatgttactttttaattgttttaaagaaaagaaaatattgcctatgataa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctgctcctcaaatgttactttttaattgttttaaagaaaagaaaatattgcctatgataa 564

                                                                       
Query: 365 ataattaagttctttaaaagtagaaactatttgattcaatttaaaggtttacaaaacttg 424
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 565 ataattaagttctttaaaagtagaaaatatttgattcaatttaaaggtttacaaaacttg 624

                                                                       
Query: 425 ttttgttaacatgaaggatgatatttttctgtatagtatttgataaaactataattacat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttttgttaacatgaaggatgatatttttctgtatagtatttgataaaactataattacat 684

                                                                       
Query: 485 cttttgaaaacacatatttagaactcaaatctattactaacccatccaagattaaatcat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cttttgaaaacacatatttagaactcaaatctattactaacccatccaagattaaatcat 744

                                                                       
Query: 545 ctcaggttaatgggaaattttggaaagagacacatttatatggacatcgccagcacacac 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctcaggttaatgggaaattttggaaagagacacatttatatggacatcgccagcacacac 804

                                                      
Query: 605 tgaaggatacaccaatataatcataactatttttccttttaca 647
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tgaaggatacaccaatataatcataactatttttccttttaca 847


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)